AMCG00005474


Basic Information

Item Value
gene id AMCG00005474
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1014652 ~ 1021117 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005474
ATGTCGGGGATCCACAGCGCTCCCACCCGCAGCATCCGGCCCTTCAGGTCCAGCGAGGAGTACCTGTTCGCCATGAAGGAGGACCTGGCGGAGTGGCTGCGCGACCTGTACCGGCTGGACATCACGCTGGACACCTTCCTGGACGCGCTGGAGACCGGGGCCGTGCTGTGCCAGCTCGCCAACAGCATCACCGGCGCCGCCGAGACCTTCCGCCGGGAGTTCGGCTCCAGGGCGGCCCGGGTGCAGCTGCCCGGCTCCGGGGTCACCTACGTCGGCGCCGCCCAGCCAGGGACCTTCGTGGCCCGGGACAACGTGTCCAACTTCATCAGCTGGTGCCGGACCCAGATGCGCATTAAAGACGTGCTCATGTTCGAGACGGAGGACCTGGTTCTGCGCAAGAACGAGAAGCACTTCGTCCTGTGCCTGCTGGAGCTGGCGCGGCGGGCGGCCCGCTTCGGGATGGCCGCCCCGGTACTGATCCAGCTGGAGCGTGAGATCGAGGAGGAGATCCGGGAGGAGCTGCACCTGCCCCCCGAGGAGACCCCCCTGCCCAAACCGCAGCGCCGCCTGTCCGACTTCAAGAACCTGGATGAGATCGTGCAGTTCCTGGTGAGCCGCTGCACCTGCCCCACCCTGTTCCCCATGGTGAAGGTGTCGGAGGGCAAGTACAGAGTGGGCGACTCCAGCACACTGATCTTCATCAGGATCCTGCGGAATCACGTGATGGTCCGTGTGGGAGGAGGCTGGGACACGCTGGAGCACTACCTGGACAAGCACGACCCCTGCCGCTGCCCGGCCCTCGCTCACAAGCAGGCAAAGCTGGCGAGCCCCCAGCGCCCGTCTGCACCCAGCCACGAGATCATGGCCCGCCTGGCACCCAGCTCTGACGGTCAGGGCCGCCCCCAGCCCACCCTGCTGCTGAGCCGCGCTCagacccccccgccccccgtgCACTGGACATCCTCCGCCCCCCCCAGCAGCCTGAGGCCGGGCCGGAACAGCAGCCCCCCGCCCCGCGCCGCCTCCCCCGGCCCTCGACCCGCTACGGCCACGGGGCTCCGGCCGCCCACCCCCAGCagGACAGGCAGGCAGGTGACACGGGGGAGCCCCTCTCTGCGCCAGACCAGCAGCCTGCCCCGCCCAGCCCCCTCGCCCACCCCAGCGGCCCCTGCCGCCACACAGCCCAACCCCCCACGCCCCCGGACGCCCGTGGTTCTTCAGCGGCCGCGGAGCCAACTCTCCCTGACCCACCCACCGCCCCCCTCTGACCGGCCGCTGGGCCACTCCTGGACCCCGGAGCGGCTCACCTCCACAGTGAGGCAGAGTCCAGCCCCTGCCGGCGCCGCCCCCCAGAACAGAACTGGGCTGCAGAGGCAGGCTGGGCTCATGCTTCCAAACAGGCCCTCCACCCCTGTTCGCAGCCGCAGTCCCATCAAGGCCTTGATCTCCCCACAGCAGCAGCCCCCCAGAGATGTGCCCCTCCGCAGACCAGCCAGCACTCCACCCAGCCCGGCCCAGCCCAGGCCCGGCACACCCGTCATTAGAACGACAGGAGGGCATCCGGCAGAGGGCAGGGGCACTAGCGGCAGCTCCGCAGCGCCCACTGGCAGCAGCTCTGTGATGAACGGAGGAGGCAGGCCGGGCGCCAGGCAGCCCAGAGAGGTCAGGGCGTGGGCCGGTGGAGACACGGTGTGGCTCGGTGTGACCCAGCCCAGCAACAGCAACTggaacaacagcaacaggggCGACGGTGTGCCACGGCCCCGGGTTCAGAGCGAGGCCAAGCCGGACAGGGGGCAGCTCTTCACCCCGCCGCCCCTGAGCCCCGAGCAGGAGAGACGTCTGTACCGCAGCCTGGAGCACGAGATCCTGGCCAACCTGCAGCAGCTGGCCCTGGAGTCGGACGACAGCCTCAgcgaggagggaggggggggctCCTGCACCCCAGACACGGCCCCTCCTGTTGAGGAGCACCCCCCGGAGAGCGCTCCCACGGCCCCCCGCAGCCCATCCCCGAGGCCGGTGGCATCCCCTCCCAAGCCCCCCCAGGACCAGGCCAGCTTCAGCGCCGTGGTGGCCGAGCTCTCCCGGGGCCCCCGCTCGCTCCGCAGGGTGGACGTGCAGCGCTGGGTGGCCCAGATTCCAGGCGGCCCTGTGGGAAGTGGTCCGGTGGAGCCCGAACCGGACGGGCTGGTCGTCCCCCGGCCCCTCAAGGCAAGCTCCTGGTCTTCGCTGGGGTCCAGCCTGGAGTGGAGGGAGCAGACGGGCGAGGAGGGGGGTGCGGAGCATGCAGCCAGTGCTAAGGCCAGGGCCCCGGACGGCCCCTCAGAACGTCCAGCGAAGTCCAGAACCCCATCCTTCAAGCAGAGGAGGGCCCTGAAGCAGCCAGAGAGGGTGCCCTCCATTTACAAGCTGAAGCTGCGGCCCAAAGTGCGCCCCCGCCGGGACCACCGCCCACACAGCAGGCCATCCAAGATCCCCACGCCCGTCTCCTACCGCCAAGCGCAGGCCGACCGTGCGGCCCGAGAGGAACGCAAGCCCCCCGGCAAAACGCCCCCCCGCCGCCCACACAGCTCTCGGGGCTCGTCCCCCATGGGCTCCGAGGAAGAGGCGTGGCCCCCCCTGAACAACCCTGCAGAGACGGTAGCGGGGAGAGACCAGGAGTCCTGGGTCTGA

Function

GO: NA

KEGG:

id description
K24627 GAS2, GAS2L; growth arrest-specific protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005474 True 2676 mRNA 0.70 6 1014652 1021117

Neighbor

gene id symbol gene type direction distance location
AMCG00005454 NA coding downstream 40933 971671 ~ 973719 (-)
AMCG00005388 NA coding downstream 141647 871157 ~ 873005 (-)
AMCG00005387 tmem132e coding downstream 613855 398920 ~ 400797 (-)
AMCG00005391 NA coding downstream 639640 350765 ~ 375012 (-)
AMCG00005395 lig3,LOC102796838,LOC107587693,LOC105924869 coding downstream 746962 260508 ~ 267690 (-)
AMCG00005476 mdh2,LOC106908802,LOC103136570 coding upstream 1918 1023035 ~ 1027249 (-)
AMCG00005475 porb,LOC107728227,LOC107598574,LOC107703971,LOC108424088 coding upstream 14979 1036096 ~ 1051408 (-)
AMCG00005473 NA coding upstream 38136 1059253 ~ 1062795 (-)
AMCG00005389 NA coding upstream 88484 1109601 ~ 1111890 (-)
AMCG00005417 NA coding upstream 278249 1299366 ~ 1300547 (-)
G152071 NA non-coding downstream 4913 998354 ~ 1009739 (-)
G151979 NA non-coding downstream 323710 690659 ~ 690942 (-)
G151972 NA non-coding downstream 636939 377355 ~ 377713 (-)
G151970 NA non-coding downstream 664330 346997 ~ 350322 (-)
G151957 NA non-coding downstream 682308 242154 ~ 332344 (-)
G152085 NA non-coding upstream 44342 1065459 ~ 1070656 (-)
G152178 NA non-coding upstream 376224 1397341 ~ 1398392 (-)
G152197 NA non-coding upstream 437120 1458237 ~ 1458662 (-)
G152320 NA non-coding upstream 671632 1692749 ~ 1693555 (-)
G152335 NA non-coding upstream 724836 1745953 ~ 1752738 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other downstream 894105 108398 ~ 120547 (-)
AMCG00005399 NA other downstream 914982 94352 ~ 99670 (-)
AMCG00005407 polr2j,LOC107587688 other downstream 947619 62355 ~ 67033 (-)
G152133 NA other upstream 198210 1219327 ~ 1335440 (-)
AMCG00005419 NA other upstream 350225 1371342 ~ 1376473 (-)
G152277 NA other upstream 484823 1505940 ~ 1507628 (-)
G152271 NA other upstream 500625 1521742 ~ 1615497 (-)
AMCG00005461 eif4h other upstream 687566 1708683 ~ 1723500 (-)

Expression


Co-expression Network