AMCG00005477 (traf4,LOC106581191)


Basic Information

Item Value
gene id AMCG00005477
gene name traf4,LOC106581191
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2766546 ~ 2778432 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005477
ATGTGCAGCTTTAGCAGTACTTTAACTTCAGAGATCAGGGTAGGAGATAGTGAGGGAGTTTTCAAGTGTCCAGAAGACCAACTGCCTCTGGACTATGCAAAGATCTACCCCGACCCTGAACTGGAGCAACAGATCCTGCTGCTGACCATTCGCTGCATTCACAGTGAGGAGGGCTGCCGCTGGACCGGACAGATGAAGCAGCTACAGGGTCACTTCTCCACGTGTGCTTTCAACGTGATCCCCTGCCCCAACCGCTGCTCCATCAAGCTGACCAGGAGAGACCTCCCGGACCACCTGCAGCATGACTGCCCAAAGCGCAAGGTCAAGTGCGAGTTCTGTGGCAACGAGTTCACTGGCGAGGCCTACGAGAACCACCAGGGCATCTGTCCCCAGGAGAGCGTATACTGCGAGAACAAGTGTGGGGCGCGGATGATGCGCAGACTTCTCTCCCAGCACAGCCTGGCCGAGTGTCCCAAACGCACCCAGCCCTGCAAATACTGTGGCAAAGAGTTCGTCTACGACACCATCCAGAACCACCAGTATCACTGCCCCCGCTTCCCAGTACAGTGCCCCAACCAGTGTGGTGCCCTGAATGTCGCCCGTGAGGACCTGTCCAGTCATGTGAAGGAGAACTGTGGCAGCGCCCTGGTTCTGTGCCCCTTCAAGGATGCAGGCTGCAAACACAGGTGTCCCAAAGTGGCCATTGGCAGGCACCTAGATGACACCACGAAGGCCCACCTGACCATGATGTGCAGTCTGGTGAGCAGGCAACGGCAGGAGATTGCGGAGCTGCGGCGAGAGGTGGAGGAGCTGTCGGTGAGCCACGACGGCGTGCTCATCTGGAAACTGGCCGACTACTCGCGCAAGCTGCAGGAGGCCAAGCTGAGGAACAACTTTGAGTTCTTCAGCCCGCCCTTCTACACCCACAAGTACGGGTACAAGCTGCAGGTGTCGGCCTTCCTCAACGGCAACGGCAGCGGCGAGGGCACCCACCTCTCCATCTACATCCGCGTGCTGCCCGGCGAGTACGACAACCTCCTGGAGTGGCCCTTCTCCTACAAGGTCACCTTCTCCATCCTGGACCAGAGCGACCCCTCGCTGTCCAAGCCCCAGCACATCACCGAGACCTTCAACCCCGACCCCAACTGGAAGAACTTCCAAAAGCCCTCTAGTTCCCGCAACTCACTGGATGAGAGCACTCTGGGCTTCGGCTACCCCAAATTCATCTCCCACGAGGAGGTCAAGAAGAGGAACTATGTGCGGGACAACTCCATCTTCCTCAAGGCCTCAATAGAGATCCCCCAGAAGATCATTGCTTGAGGGGGCTGTTTCACGAGGTCAGAAGACTAAAGACCCCGACCTGAGTCCGTTCAAAGAGCTCGCCCAGCCTCTTCCCGGTGTCAGTGTCTCGTCTGCCAACCGAGAAAAGGCCTGCAGACTGGCATGGTTTAGCTACTCAAGTACAGAAGCTGGCTTCTTCCTCAAAAGTGAGGTGAAAGTGTTTTGATTTGCGACCTTCACTTTCTGACTTAGTGTTCAATAATAGAAAGTCTTGGAGATTCAACAGTGCCTagattaatttttttcctccattttaCGTTCTCCCTTTTATACCAACTTGCTAAAGGAACGTTCCTGAATAGAGCATCCAACGAGTGGTTCTCAGATTTAGATTCGAGACCTGCTTCTTTCGATAGTATTCAATTGCCAATGGGAAGTGATTGTCTTGAATGCTCTCTGCTGTACAGTGAACCCTAATTTCAGTGTTTCTAAGGAGAAAATTCCTGCAGCAACAAAAGATCTAAAAAATGATCCGTTGACCGTAAATGCGCACATTCCAAACCTTGCAGTTTGCCTATCCCTTTCCTTTCTAGAGACTAGCGATACTAGGATTTCTGCTTCCATCCTGTTTTTCAAAGGAAATGCgcattaattaatcatttaaactactgtgaaagatttttttttctctctctcatcctctgCATATGTCAAAATAATCATCTTTACGCAAAAgacatgtctgtgtgtttcctgATACCAAACCTCTGATGGTAGCCAGACGTTTTGTTTCACACTTCTGGGGCCAAAGacgtgtgtttttgtgtttttggcaTGTGGAAGGCGGGGCCATCCTGTGATGTTAGGTCTGTGCGTCCCTCTGACGCACGATCGCTGGAGAACACGTATGACGTTTTTGCCATAAGCACGGTGCTAATGTAAGGTTGTCGCGAAGATTTTGAACAATCCCTACACTTGAAACGCAGTGTAAAACTCCAGGCAGCGTCATTATCGCTTAATAGCAGGAAAGAAAAGCCATCCAAACAGCGAGAGATTGTTTACAAATCCAGATGTTTCTAGTGTCATGGAGAGGGGACGAGCGAGGAAATAAAATCGTCGTGCAAAGCTGCAAACTTTGAAATTCTGTACTGTAACCTGTATTGGAAACCGACTAGGACCCCAAAGAAATCAGAACTTGGACCCACCAGCCAATCGCCAATCACAAATCATGGTCTTGATGGTGGCTTTTGATTTGTCAGATCAGAGGCTTCTTGCTTCTACCTGCGGGAAACCCCAATCAGTTCTCATATTAGTAAGATGTTTGTATTAGACCATGTTTCTGCCCAGGTTTTAGAAGTGTGATTCTGGCCTAATTTTGGCTCTAAACTAGGCAAACTACAATAGGCGTGCATCTAAAGGTCCATAGGACATTGTAAGGAGAAAACAATAGGATCTGCCTTTGAAATATTGAGAGAGATTAGGCATTGTGAAATACAGCAGTTAATGCCAGAATCTGAACTGTCAGAATAAAGAAGAAAGttgataatatattatatatatgtatactaatgtacaaagaaaacacgaaagcacatttttctgtactttttatTCCGAAAGAACAACCTTGATTTCATCTGTTTCTAATCACAACCTAATGTTTTGCAATGATTTTACgaaacaaaactgaagatttttgtagccatattttgcaaaatgtttttttaaactaaaacaaaaatgggagGATGATTCGTGTGGGGGAGGGAGGTTGAGTCGGGGAGCATGGCAATTGTATAAATGGTTTTAAGTTCTGTTTCatggaaatctgtattttttttttgtccgttcgttttttttttagatttttaatatcctgtctgtattatttctccttgtaaatgtatttatttttagcggCCACCTTGTCTTGGTAGAGTGAAAATGTGGCGTCTGCATTCTGATAGGTTGAATGATGACTGCTTGTCAAATtctttttggaaataaaatattactcaTTAA

Function

symbol description
traf4 Enables several functions, including WW domain binding activity; enzyme binding activity; and tumor necrosis factor receptor binding activity. Involved in positive regulation of JNK cascade and positive regulation of protein kinase activity. Located in cytosol; fibrillar center; and nucleoplasm.

NR:

description
PREDICTED: TNF receptor-associated factor 4 isoform X1

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0007165 signal transduction biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09848 TRAF4; TNF receptor-associated factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005477 True 3303 mRNA 0.47 7 2766546 2778432

Neighbor

gene id symbol gene type direction distance location
AMCG00005478 tada2a,LOC107661114,LOC106612794,LOC106581187 coding downstream 72442 2683637 ~ 2694104 (-)
AMCG00005505 dusp14,LOC107672422,LOC107727911 coding downstream 114999 2650912 ~ 2651547 (-)
AMCG00005485 NA coding downstream 181253 2584850 ~ 2585293 (-)
AMCG00005519 mate4,slc47a2,LOC107599236,LOC107599264,LOC106604060 coding downstream 433650 2331855 ~ 2332896 (-)
AMCG00005520 LOC106604060,LOC107718056,LOC102197200,LOC101483717,LOC102785299,LOC106946208 coding downstream 444903 2308678 ~ 2321643 (-)
AMCG00005496 nek8,LOC107672375 coding upstream 32794 2811226 ~ 2821222 (-)
AMCG00005495 zgc:174895,LOC105911024,LOC107580547 coding upstream 78845 2857277 ~ 2863981 (-)
AMCG00005479 NA coding upstream 213985 2992417 ~ 3005846 (-)
AMCG00005480 NA coding upstream 372612 3151044 ~ 3151919 (-)
AMCG00005501 LOC108435815,LOC107756385,LOC107666187 coding upstream 571525 3349957 ~ 3365350 (-)
G152473 NA non-coding downstream 321449 2415072 ~ 2445097 (-)
G152452 mate4,LOC107718064,LOC107718062,LOC107699952,LOC106604060 non-coding downstream 447874 2294833 ~ 2318672 (-)
G152424 NA non-coding downstream 590592 2167604 ~ 2175954 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding downstream 819746 1941023 ~ 1946800 (-)
G152335 NA non-coding downstream 1013808 1745953 ~ 1752738 (-)
G152652 NA non-coding upstream 381625 3160057 ~ 3160364 (-)
G152661 NA non-coding upstream 405389 3183821 ~ 3184685 (-)
G152665 NA non-coding upstream 422753 3201185 ~ 3201687 (-)
G152736 NA non-coding upstream 528254 3306686 ~ 3308431 (-)
G152793 NA non-coding upstream 920379 3698811 ~ 3725372 (-)
AMCG00005517 NA other downstream 356299 2406525 ~ 2410247 (-)
AMCG00005532 NA other downstream 436862 2197354 ~ 2329684 (-)
AMCG00005461 eif4h other downstream 1043046 1708683 ~ 1723500 (-)
G152271 NA other downstream 1151049 1521742 ~ 1615497 (-)
G152277 NA other downstream 1258918 1505940 ~ 1507628 (-)
AMCG00005491 supt6h,LOC107603297 other upstream 94074 2872506 ~ 2890448 (-)
G152645 NA other upstream 293428 3071860 ~ 3090714 (-)
AMCG00005525 LOC106567758 other upstream 828529 3606961 ~ 3632712 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other upstream 1071704 3850136 ~ 3869209 (-)
AMCG00005539 NA other upstream 1506285 4284717 ~ 4292871 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008387 traf4a coding NC_007126.7 CM002899.2 15516612 ~ 15593263 (+)
grasscarp (Ctenopharyngodon idella) CI01000053_02817187_02856529 TRAF4A, TRAF4 coding CI01000053 null 2815866 ~ 2856648 (-)