AMCG00005480


Basic Information

Item Value
gene id AMCG00005480
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3151044 ~ 3151919 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005480
ATGAACAGCAGGGCCAGTCTGACCGAGTCCGAGTTCTCCGAGGACGAGCTGGAGGGGAGTCTCTTGGGCAACGACGATTATACCTCAGGAGTGGGGGAGCTGGGCAAGACCTCCCCGAGCAGCGACAGCTCAGCCAGTTGCACCAGCGAGCCGGAGGAGGCCAAGTTGAAGAAGAGGAGCCGCCCGGTGCGCTCCAAGGCCCGGAGGGTGGCGGCCAACGTGCGCGAGAGGAAACGCATCTTGGACTACAACCAGGCTTTCAACGCCCTGCGCATGGCCCTGAAACACGACCTCAACGGCAAGCGGCTGTCCAAGATCGCCACGCTGCGGAGGGCCATCAACCGCATCTCCTCGCTCTCTGTCTTCCTGCGCTCCAACCCCACAgcccccgccgccgccgccgcccccCGGCACCCCTGCGCACACCCCGAGTGCCACGGACCCCTGGAGGAGTCCCGAATGGAGATGGGCAAGGAGGAGGGCTACCAGATGCCCCCAGAGACCCACCTGCATCCCCAGCCACCTGCCCACCACCAACATGCTcttccccacacacacccctcgGAACAGCTCTACGCAGACCCCCCCGGACACCTGGTCCCCTCCTGTTCCCCTTCTCCCCATTACCACCGCTACTCCCCCGAGAGCCAGCTCTACCTCCCCCACCACGGACACTACAACAGCCCCCGAGAGGAGATCAGGAGCCCCCCTTATTACGGCAACGGTGGAGGTGCTGGCTACCAGTTTGGGGTGAGGACCACATGCCACCAGAACCACATGGACAACCTGGCAGAGTGCTCCTCCCCTCTGCCCTTTTCCTGGCAGCTCAGTTACTTACAAGGCACTGGCTACCAACAGTCCCTCTCCATGCACTGA

Function

GO: NA

KEGG:

id description
K24145 BHLHA9; class A basic helix-loop-helix protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005480 True 876 mRNA 0.64 1 3151044 3151919

Neighbor

gene id symbol gene type direction distance location
AMCG00005479 NA coding downstream 145198 2992417 ~ 3005846 (-)
AMCG00005495 zgc:174895,LOC105911024,LOC107580547 coding downstream 287063 2857277 ~ 2863981 (-)
AMCG00005496 nek8,LOC107672375 coding downstream 329822 2811226 ~ 2821222 (-)
AMCG00005477 traf4,LOC106581191 coding downstream 372612 2766546 ~ 2778432 (-)
AMCG00005478 tada2a,LOC107661114,LOC106612794,LOC106581187 coding downstream 456940 2683637 ~ 2694104 (-)
AMCG00005501 LOC108435815,LOC107756385,LOC107666187 coding upstream 198038 3349957 ~ 3365350 (-)
AMCG00005497 msi2b,LOC105028669,LOC106603292 coding upstream 414918 3566837 ~ 3568504 (-)
AMCG00005524 NA coding upstream 431482 3583401 ~ 3604355 (-)
AMCG00005552 LOC106567758,LOC106603288 coding upstream 500716 3652635 ~ 3692107 (-)
AMCG00005561 cuedc1,LOC107682807,LOC107587359,LOC107746650,LOC107672109,LOC107757269 coding upstream 655846 3807765 ~ 3821342 (-)
G152473 NA non-coding downstream 705947 2415072 ~ 2445097 (-)
G152452 mate4,LOC107718064,LOC107718062,LOC107699952,LOC106604060 non-coding downstream 832372 2294833 ~ 2318672 (-)
G152424 NA non-coding downstream 975090 2167604 ~ 2175954 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding downstream 1204244 1941023 ~ 1946800 (-)
G152335 NA non-coding downstream 1398306 1745953 ~ 1752738 (-)
G152652 NA non-coding upstream 8138 3160057 ~ 3160364 (-)
G152661 NA non-coding upstream 31902 3183821 ~ 3184685 (-)
G152665 NA non-coding upstream 49266 3201185 ~ 3201687 (-)
G152736 NA non-coding upstream 154767 3306686 ~ 3308431 (-)
G152793 NA non-coding upstream 546892 3698811 ~ 3725372 (-)
G152645 NA other downstream 60330 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 260596 2872506 ~ 2890448 (-)
AMCG00005517 NA other downstream 740797 2406525 ~ 2410247 (-)
AMCG00005532 NA other downstream 821360 2197354 ~ 2329684 (-)
AMCG00005461 eif4h other downstream 1427544 1708683 ~ 1723500 (-)
AMCG00005525 LOC106567758 other upstream 455042 3606961 ~ 3632712 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other upstream 698217 3850136 ~ 3869209 (-)
AMCG00005539 NA other upstream 1132798 4284717 ~ 4292871 (-)
G153130 NA other upstream 2148850 5300769 ~ 5302198 (-)
G153342 NA other upstream 2929316 6081235 ~ 6082866 (-)

Expression


Co-expression Network