AMCG00005481 (dynll2a,LOC107554284,LOC103397138)


Basic Information

Item Value
gene id AMCG00005481
gene name dynll2a,LOC107554284,LOC103397138
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2503910 ~ 2510676 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005481
ATGGCAGCCGCTGCGGCGTGCGGCAGTGCGGAGGGCGGGGGAGGCACGATGTCTGACAGGAAGGCTGTGATCAAGAATGCTGACATGTCTGAGGACATGCAGCAGGATGCAGTGGACTGTGCCACCCAGGCCATGGAGAAGTACAATATTGAGAAGGACATTGCTGCCTACATCAAAAAGGAGTTCGACAAGAAGTACAACCCCACCTGGCACTGCATCGTGGGTAGGAACTTCGGCAGCTATGTGACACATGAGACGAAGCACTTCATCTACTTCTATCTGGGACAGGTGGCCATCCTCCTCTTCAAGTCTGGCTGAGCCGTGCCTTGCCGGCGAGAGAACCACTGGACTGTAATGCACTGATGGCTGATGCCACACCTCCCCACACACTtcagaaattataaaacaaaaaaaaaacaagcgaATACAAAACTGGCTGTGCGCGACTGCATGGactgtatacaatatttaatgtgtatatGTTGCAGTAAAAATCTTACTTTTCTTTAGTTGCCTGGAAGAAAATGTGAAGCAACAGGAagagatttttttgttaatgcttttattatttttgttattgcactgaagttgtaaaaaaataaataaaaaaatatatatataaaatttgcTTTAACGGTGGCCtttaagtgaaaataaagaatagtTCTAAAGTTAAAAGAATGTGTTAAGTCTACTAAACCTGAGGATCTGAGTGGAGTATAGAAAGGTGCATTATTCAGTGTTGAAGGTTTTGCTAGTACTGTCACTTAATCTTCCTCTGTTTTGTGATGTCTTGTCTTTGCAAAACGCAGCCATTCTGGTATTTTTAAAGCCGAAAAAAGAAATCTCAACTGGAATCTCATGCCtgtacaatgcattttaaagccGGTGGGGGAGAGTCATTGCTAGTCGTGAAAATTCTGCACATGTTGAAAATCTGCACAAATGTCAGGTTATTGTGGAATTTCGTTTTCAAACGGAGCGGTTATCTTGTCGCCGCAAGTCAGCAAGACGCTACACATTCTTGCTCAACCATTGTCAAGTGTACTTTTTGATCTCCTGAAAATGGCTTAGATTTAggattttgattatttttttgtatccaaGATTGCGAACTTCAGACTTCCAGAATTTAGAAATGGGTGTCCCAGTGCAGTACAAAAGAGCCTTGTAGTTTAGTGTGGGTTCAAATATTTTTCCCCTGCTTTGTCCTGAAGGCAGACATTTATGGAACAATTTAATTGGCATTTTGACTGAAATATGTGTGTGGGTTCCAGCTGTTACTCCTGGTGCATAGCGAAAAGGCTCACTTGTGAAAAAGGGAGGATGGTGGAAGTACTTCAATACTTTAACTAAGTTGCACGCAGTAAATGTATGCTTCGCAAACCCCACATGCCCGAGTTTATTCCAGGATAGGGGTAAAACCCTGACACCTGAACGCTTGGCTTACCTCCatcacaaaatgtatacatctaaCATGtatgaatgtgaaatgttaACTTGTTCTAATAGGAGCCAGACATTGAATGCATAAATATCAAATTATTGTCATTAATTGCTGCTCTGGTCACTTCTGTTGTagttttgatatttatttagcggtatttttattttgtgtgcaagATTCTATAGGTTCAATGGAGTGACGAACTTGTTTATCCCTTCGGAACAAATTGCTATCTATGAATGACATGTTTTACAAACTGAAGTATAATACCTTGTTTGGAATTCAGTTCTAcacctgggggtgggggtgtgttttgtatatttaaaaaaagatgtcaGCCACTGCCCATTTCAGACGATCCTGTACAGATTTCTGTCTTGACCCTATTCACATTCATTAAACAATGTGTGATCAACATTATTAAAAGCCACA
>TU192048
CAGATACCCGCAGATGAGCTACGAGCAAATCTGTACAGAGAGCAAACCGCAAAGCCGCTCAGCGAACCAGCAAAGCAGGCGAGCAGGACAGGGTTTTGTGGACCGTAAATCCTAAAATAACGTCAACCAAGGCACGATGTCTGACAGGAAGGCTGTGATCAAGAATGCTGACATGTCTGAGGACATGCAGCAGGATGCAGTGGACTGTGCCACCCAGGCCATGGAGAAGTACAATATTGAGAAGGACATTGCTGCCTACATCAAAAAGGAGTTCGACAAGAAGTACAACCCCACCTGGCACTGCATCGTGGGTAGGAACTTCGGCAGCTATGTGACACATGAGACGAAGCACTTCATCTACTTCTATCTGGGACAGGTGGCCATCCTCCTCTTCAAGTCTGGCTGAGCCGTGCCTTGCCGGCGAGAGAACCACTGGACTGTAATGCACTGATGGCTGATGCCACACCTCCCCACACACTtcagaaattataaaacaaaaaaaaaacaagcgaATACAAAACTGGCTGTGCGCGACTGCATGGactgtatacaatatttaatgtgtatatGTTGCAGTAAAAATCTTACTTTTCTTTAGTTGCCTGGAAGAAAATGTGAAGCAACAGGAagagatttttttgttaatgcttttattatttttgttattgcactgaagttgtaaaaaaataaataaaaaaatatatatataaaatttgcTTTAACGGTGGCCtttaagtgaaaataaagaatagtTCTAAAGTTAAAAGAATGTGTTAAGTCTACTAAACCTGAGGATCTGAGTGGAGTATAGAAAGGTGCATTATTCAGTGTTGAAGGTTTTGCTAGTACTGTCACTTAATCTTCCTCTGTTTTGTGATGTCTTGTCTTTGCAAAACGCAGCCATTCTGGTATTTTTAAAGCCGAAAAAAGAAATCTCAACTGGAATCTCATGCCtgtacaatgcattttaaagccGGTGGGGGAGAGTCATTGCTAGTCGTGAAAATTCTGCACATGTTGAAAATCTGCACAAATGTCAGGTTATTGTGGAATTTCGTTTTCAAACGGAGCGGTTATCTTGTCGCCGCAAGTCAGCAAGACGCTACACATTCTTGCTCAACCATTGTCAAGTGTACTTTTTGATCTCCTGAAAATGGCTTAGATTTAggattttgattatttttttgtatccaaGATTGCGAACTTCAGACTTCCAGAATTTAGAAATGGGTGTCCCAGTGCAGTACAAAAGAGCCTTGTAGTTTAGTGTGGGTTCAAATATTTTTCCCCTGCTTTGTCCTGAAGGCAGACATTTATGGAACAATTTAATTGGCATTTTGACTGAAATATGTGTGTGGGTTCCAGCTGTTACTCCTGGTGCATAGCGAAAAGGCTCACTTGTGAAAAAGGGAGGATGGTGGAAGTACTTCAATACTTTAACTAAGTTGCACGCAGTAAATGTATGCTTCGCAAACCCCACATGCCCGAGTTTATTCCAGGATAGGGGTAAAACCCTGACACCTGAACGCTTGGCTTACCTCCatcacaaaatgtatacatctaaCATGtatgaatgtgaaatgttaACTTGTTCTAATAGGAGCCAGACATTGAATGCATAAATATCAAATTATTGTCATTAATTGCTGCTCTGGTCACTTCTGTTGTagttttgatatttatttagcggtatttttattttgtgtgcaagATTCTATAGGTTCAATGGAGTGACGAACTTGTTTATCCCTTCGGAACAAATTGCTATCTATGAATGACATGTTTTACAAACTGAAGTATAATACCTTGTTTGGAATTCAGTTCTAcacctgggggtgggggtgtgttttgtatatttaaaaaaagatgtcaGCCACTGCCCATTTCAGACGATCCTGTACAGATTTCTGTCTTGACCCTATTCACATTCATTAAACAATGTGTGATCAACATTATTAAAAGCCACAggctttgtg
>TU192049
CCCGGGGAGAGGCCGCCGCTCAGCCAATGGCAGCCGCTGCGGCGTGCGGCAGTGCGGAGGGCGGGGGAGGTATTTTAGCGGGGCAGATACCCGCAGATGAGCTACGAGCAAATCTGTACAGAGAGCAAACCGCAAAGCCGCTCAGCGAACCAGCAAAGCAGGCGAGCAGGACAGGGTTTTGTGGACCGTAAATCCTAAAATAACGTCAACCAAGGCACGATGTCTGACAGGAAGGCTGTGATCAAGAATGCTGACATGTCTGAGGACATGCAGCAGGATGCAGTGGACTGTGCCACCCAGGCCATGGAGAAGTACAATATTGAGAAGGACATTGCTGCCTACATCAAAAAGGAGTTCGACAAGAAGTACAACCCCACCTGGCACTGCATCGTGGGTAGGAACTTCGGCAGCTATGTGACACATGAGACGAAGCACTTCATCTACTTCTATCTGGGACAGGTGGCCATCCTCCTCTTCAAGTCTGGCTGAGCCGTGCCTTGCCGGCGAGAGAACCACTGGACTGTAATGCACTGATGGCTGATGCCACACCTCCCCACACACTtcagaaattataaaacaaaaaaaaaacaagcgaATACAAAACTGGCTGTGCGCGACTGCATGGactgtatacaatatttaatgtgtatatGTTGCAGTAAAAATCTTACTTTTCTTTAGTTGCCTGGAAGAAAATGTGAAGCAACAGGAagagatttttttgttaatgcttttattatttttgttattgcactgaagttgtaaaaaaataaataaaaaaatatatatataaaatttgcTTTAACGGTGGCCtttaagtgaaaataaagaatagtTCTAAAGTTAAAAGAATGTGTTAAGTCTACTAAACCTGAGGATCTGAGTGGAGTATAGAAAGGTGCATTATTCAGTGTTGAAGGTTTTGCTAGTACTGTCACTTAATCTTCCTCTGTTTTGTGATGTCTTGTCTTTGCAAAACGCAGCCATTCTGGTATTTTTAAAGCCGAAAAAAGAAATCTCAACTGGAATCTCATGCCtgtacaatgcattttaaagccGGTGGGGGAGAGTCATTGCTAGTCGTGAAAATTCTGCACATGTTGAAAATCTGCACAAATGTCAGGTTATTGTGGAATTTCGTTTTCAAACGGAGCGGTTATCTTGTCGCCGCAAGTCAGCAAGACGCTACACATTCTTGCTCAACCATTGTCAAGTGTACTTTTTGATCTCCTGAAAATGGCTTAGATTTAggattttgattatttttttgtatccaaGATTGCGAACTTCAGACTTCCAGAATTTAGAAATGGGTGTCCCAGTGCAGTACAAAAGAGCCTTGTAGTTTAGTGTGGGTTCAAATATTTTTCCCCTGCTTTGTCCTGAAGGCAGACATTTATGGAACAATTTAATTGGCATTTTGACTGAAATATGTGTGTGGGTTCCAGCTGTTACTCCTGGTGCATAGCGAAAAGGCTCACTTGTGAAAAAGGGAGGATGGTGGAAGTACTTCAATACTTTAACTAAGTTGCACGCAGTAAATGTATGCTTCGCAAACCCCACATGCCCGAGTTTATTCCAGGATAGGGGTAAAACCCTGACACCTGAACGCTTGGCTTACCTCCatcacaaaatgtatacatctaaCATGtatgaatgtgaaatgttaACTTGTTCTAATAGGAGCCAGACATTGAATGCATAAATATCAAATTATTGTCATTAATTGCTGCTCTGGTCACTTCTGTTGTagttttgatatttatttagcggtatttttattttgtgtgcaagATTCTATAGGTTCAATGGAGTGACGAACTTGTTTATCCCTTCGGAACAAATTGCTATCTATGAATGACATGTTTTACAAACTGAAGTATAATACCTTGTTTGGAATTCAGTTCTAcacctgggggtgggggtgtgttttgtatatttaaaaaaagatgtcaGCCACTGCCCATTTCAGACGATCCTGTACAGATTTCTGTCTTGACCCTATTCACATTCATTAAACAATGTGTGATCAACATTATTAAAAGCCACAggctttgtg

Function

symbol description
dynll2a Predicted to enable cytoskeletal motor activity. Predicted to act upstream of or within microtubule-based process. Located in P granule and nucleus. Is expressed in central nervous system; hindbrain; lateral line ganglion; polster; and rhombomere. Orthologous to human DYNLL2 (dynein light chain LC8-type 2).

NR:

description
PREDICTED: dynein light chain 2, cytoplasmic-like

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0005875 microtubule associated complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043186 P granule cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005481 False 1879 mRNA 0.40 3 2503936 2510667
TU192048 False 1976 TUCP 0.40 3 2503993 2510676
TU192049 True 2059 TUCP 0.42 3 2503910 2510676

Neighbor

gene id symbol gene type direction distance location
AMCG00005483 LOC108431323,LOC108278759,LOC100705065,LOC107714048 coding upstream 2183 2495360 ~ 2501727 (+)
AMCG00005482 NA coding upstream 9673 2487213 ~ 2494237 (+)
AMCG00005512 aldoc,LOC107581922,LOC107661747,LOC107587231 coding upstream 19458 2480675 ~ 2484452 (+)
AMCG00005510 NA coding upstream 32059 2460248 ~ 2471851 (+)
AMCG00005511 NA coding upstream 46338 2447382 ~ 2457572 (+)
AMCG00005484 NA coding downstream 1546 2512222 ~ 2520954 (+)
AMCG00005504 hnf1b coding downstream 35717 2546393 ~ 2565500 (+)
AMCG00005503 NA coding downstream 55713 2566389 ~ 2569710 (+)
AMCG00005502 synrg,LOC107727910 coding downstream 72723 2583399 ~ 2638908 (+)
AMCG00005493 NA coding downstream 323821 2834497 ~ 2844701 (+)
G152397 NA non-coding upstream 180565 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 1041971 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 1045163 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1249951 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1446515 1057185 ~ 1057395 (+)
G152644 NA non-coding downstream 561274 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 673145 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 688656 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 749534 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 1213237 3723913 ~ 3761827 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 557110 1929455 ~ 1946800 (+)
G152337 NA other upstream 700007 1799811 ~ 1803903 (+)
G152267 NA other upstream 754976 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 986330 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 1124608 1376468 ~ 1379302 (+)
G152588 rpl23a other downstream 334541 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 755698 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1771841 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 2049537 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 2704137 5214813 ~ 5241776 (+)

Expression


Co-expression Network