AMCG00005482


Basic Information

Item Value
gene id AMCG00005482
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2487213 ~ 2494237 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005482
ATGGCTGCAACGATAGTGGAGAAGTGGCGGGGGCGGAACGCGGCGCTGGCCATCGCCGCAGTGGTCATTATTATCGGGATCCCTCTATGGTGGAAAACCACAGAGACCTACCGCGCCGGCCTGCCCTACTCCGAGATCAGCCAGCTGGAGAACCTGCAGCTCCAGCTGACTGTGGCTGTGGAGGTGGTGTTCTCCAGGGGCACACTGACCCCTGAGCAGCAGAAGAAAGTCCCACTGACAGACACCCATGAAAAGGAGCACAGTGTGGATGAGGCTGACCTGTCTCTGTTCAGGCTGAGTGAAAGCCCGTGTGGCTCAGTGGTTGTGTATGTGATCCCGGAGTCGTCCACACTGCTGCCGGAGGGCGCCAGCGCGTACGTGGGGAAGCGGCGCACGGCGGTGCTGCGCGGGGGCCGGGGCCGGCCGGGGGGGCTGGCGGCGGTGCTGGAGGCGTTGGGTCCAGCGCTGGAGCAGGTGGTGCAGACCATGTCCTTCACACACCAGGACATCACTGCCGCGCTCACCGACCGAGTCCCTCTCGGCAAGACCAACAGGGAGGGACGAGCTGACGGCATGAGGGCCTTCAAATCCAGCCCGGGATATGAAATCACATTCAGTCTCTTGAACCCGGACCCCAAGTCCCACGACCTGCACTGGGACATAGAGGGCGCTGTGAAGGGCTACATACAGCCCCTGTTGGATAAGCTGACACCTATTGCCAACTTCTCTGTGGATTCCCAGATCCTGTACTACGCCATCCTGGGAGTGAGTCCCCGCCATGACGCCAGCATCGATGGCTACACGCTCAGCGCAGACAGCCTGCCGCACGTCATCAACCCTGTGGAGGCCCGGCTGGgctCCAACGCCGCTTCCTCCTTCCCAGTACTGAACTTCCTGCTGTATGTCCCGGACGCCCCCCACTCGCCCCTGTACATCCGGGACCACAGCGGCAAGACGGTGCCCACCAATGCCTTCCACAGCCCACGATGGGGGGGCATCATGGTGTTCAATGTGCAGGAGCACTACGGAGAGGAGCCACGCTTCCCTGTGCACATCAACATCGACATGGTGCGCGTGATGGGCGTCTTCCTGGCCCAGCTGAGGCTGCTGCTGGGCATCCAACAGGTGCAGGCACCCCCAGGCTTCCTGCTGCAGAGCCCAGGTAACGAGGGGGTGACCGACTGGGAGCTGGACCGACTGCTGTGGGCCCGCACCGCCGAGAACATCGCCACGGCCACCACCACCCTCACCTCCCTGGCGCAGCTGCTGGACGAGATCGGCAACATCGTCATCAACGACAACATCGCCGAGCAGGTGTACAGCGCCGTGGTCTCGCTGCAGTTGGCGGTGGCGGAGCTGGAAGCCGGGAACCTGGCCTTCGCGTTCCAGGCCAGCAAGGAAGCCATCCTGTCCTCGGAGAGAGCGTTCTTCGACCCCTCCCTGCTGCACCTCCTCTACTTCCCCGATGACCAGAAGTTCGCCATCTACATCCCGCTCTTCCTGCCCATGTCGGTGCCCATCCTGCTGTCGCTGCTCAAGATCGCGGGGGAGTACCGGAAGAGGCGCAGCGAGCGGGTCAAGACGGACTGACCACTTCGAGGCCggcactgctggacaccgaggcCCACTCTCGCCcctggactgtttttttttttttttttcttgtagtttttatttcacatttaattttttaccCCCACTTTTCCTTCCATAGaggcatttttgtttaaattagttCTCCTTTTCTTGTCTTACAGTCTGTTCCCTCACAGAACTGTTGTTCCAGCTAAACCCTTAATTCCTCTGTGCAGATTAGCAATTATGCTGATGCTAAATGAgctgtttaattgaattaaggAGACGTCTGTAAAAGGACTGAGAAGTGGTGCTGTATTTGccatttgtacttttttttgtacCCCTTTTTGTCCTAGAGACTCCTAACccccccaaagaaaaaaaaaaacaaaatgtacccAGTAATCTGTCTTCTGCCACCAGGGTGTATTGTGTGGAGTTTAAAGAGGGAATTGAACGTCTCAGTTTTATCTACTTTGTGCTGAAAAACAGCAGTTTTTGATCAGGGAAGATGTTTTCAATGTATACTAGGTTAAAAAATGTCAGTGTGGAAGCAGGTAGAGGGTGAGTGAGTTTGCATtaaacatctatttatttattctgggtATAAAGCACTCTGTATACTTGGAATCTGTAGTCATAGTTTTGGAGATATAGGAGAAATTCTGGACCTAAACAATGCAGAAACTAAATATAATGCAAGGGACTGTATATTCTCGAAAGGCCACGCCCAACCTATAGACTGTGTATATATTATCATCTCTGCTGAGGAGACTGCACTACTCTGTAGCATGCTGGCAAACTTTCACAAACCCTTTCCCTATATGTAGAGGATGCGTTGTGTAACTGCACATGGCTGAAGTATTGTTCAGAGTAGCTGGCAGttacactttgttttaaacactGTAATGATCATCGGGTGACACAACCGGCCTCTGTGACACAAACCCCATACTGCTGCCTTTCTGCTGTGGCCAGGTGGGAAACAAaggaattaaagaaacaaaagcagcgAAGCTGGTTTAGTGAGAGCAGATGCGGTCTGGAGTGCAGTGTGAAAGAATC

Function

GO:

id name namespace
GO:0016255 attachment of GPI anchor to protein biological_process
GO:0042765 GPI-anchor transamidase complex cellular_component

KEGG:

id description
K05291 PIGS; GPI-anchor transamidase subunit S

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005482 True 2643 mRNA 0.54 11 2487213 2494237

Neighbor

gene id symbol gene type direction distance location
AMCG00005512 aldoc,LOC107581922,LOC107661747,LOC107587231 coding upstream 2761 2480675 ~ 2484452 (+)
AMCG00005510 NA coding upstream 15362 2460248 ~ 2471851 (+)
AMCG00005511 NA coding upstream 29641 2447382 ~ 2457572 (+)
AMCG00005513 NA coding upstream 42130 2417078 ~ 2445083 (+)
AMCG00005515 LOC102196260 coding upstream 71625 2410567 ~ 2415588 (+)
AMCG00005483 LOC108431323,LOC108278759,LOC100705065,LOC107714048 coding downstream 1123 2495360 ~ 2501727 (+)
AMCG00005484 NA coding downstream 17985 2512222 ~ 2520954 (+)
AMCG00005504 hnf1b coding downstream 52156 2546393 ~ 2565500 (+)
AMCG00005503 NA coding downstream 72152 2566389 ~ 2569710 (+)
AMCG00005502 synrg,LOC107727910 coding downstream 89162 2583399 ~ 2638908 (+)
G152397 NA non-coding upstream 163868 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 1025274 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 1028466 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1233254 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1429818 1057185 ~ 1057395 (+)
G152644 NA non-coding downstream 577713 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 689584 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 705095 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 765973 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 1229676 3723913 ~ 3761827 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 540413 1929455 ~ 1946800 (+)
G152337 NA other upstream 683310 1799811 ~ 1803903 (+)
G152267 NA other upstream 738279 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 969633 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 1107911 1376468 ~ 1379302 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 9673 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 350980 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 772137 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1788280 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 2065976 4560213 ~ 4563020 (+)

Expression


Co-expression Network