AMCG00005483 (LOC108431323,LOC108278759,LOC100705065,LOC107714048)


Basic Information

Item Value
gene id AMCG00005483
gene name LOC108431323,LOC108278759,LOC100705065,LOC107714048
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2495360 ~ 2501727 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005483
CGGCCGGAAACACGTCACAGCGGCAGTCCCGCCCTCCGCATAAAGGTTCACAGTTCACTCCTCCGCCATCAAACGAGGTTGTTTTCAAATAGTTCAAGCAAGGGAAGGATACCTTGGCGCTGGAATCGCGGTTACGGTGATATTTCCTGTACTGGGCTTCTGCGCTGCTGCTCGGACACAGCCGTCCGTTGGCAATAAAGCCGGACTAGATCGCGAGTCGGAGGAGCACTTTCCTCAGGCGTGGAGAAATCTCGGTTCCTGGTGTTCCTCCGCGCAGCGCACGGCGGTTCAAAAAAGGAGGACGGCGGCGCCATTTTGAAGGAGGTTGGAAGGAAGCGAGAGGAATAAGAAAacgaaaacaaataaaagcggCGGAGCTCGTCAGTCAGCAGCGGGAGGATTTTAATAGTGAAGTTCGAGTTTATTTTGTTCACGCCTTTTTAAGCGCCATACTATCCAGCTTTCGTTTCTTCTAACCATGTCTGGTGGCGGTGTGATCCGAGGCCCTGCTGGCAACAACGACTGCCGAATCTACGTGGGGAACCTGCCCCCCGACATCCGCACCAAGGACATCGAGGACGTCTTCTACAAGTACGGGGCGATCCGGGATATCGACCTGAAAAACCGACGCGGAGGACCGCCGTTCGCCTTCGTGGAGTTCGAGGATCCCAGggacGCCGAGGACGCGGTGTACGGACGGGATGGCTATGACTATGACGGATACCGCCTGCGAGTCGAGTTCCCCAGAAGCGGCCGGGGCACAGGGAGAGGAGGCGGCGGGGGCGGTGTGGGCGCCCCCCGGGGCAGGTATGGGCCCCCCTCCAGACGCTCCGAGTACAGAGTCATAGTTTCAGGGCTTCCTCCAAGCGGGAGCTGGCAGGATTTGAAGGATCACATGCGTGAAGCAGGTGATGTATGTTATGCTGACGTTTTCCGAGATGGAACTGGTGTTGTGGAGTTTGTTCGCAAAGAAGATATGACCTACGCTGTACGAAAACTGGATAACACTAAATTCAGATCTCATGAGGGAGAGACTGCGTACATCCGTGTGAAAGTCGACGGCCCCCGGAGCCCCAGCTATGGAAGATCGCGCTCTCGCAGCCGCAGCCGCAGCCGGAGCCGCAGCCGAAGCAACAGCCGCAGTCGCAGCTATTCCCCGCGGCGCAGCCGAGGATCACCGCGCTACTCGCCGCGCCACAGCCGCTCCCGCTCTCGTACCTAAACTCAGCCGCCTCCCATGTGTTGTTCTCTGGAGGAATCCCTTTGTTGTAGTACATaatttcttttcctttatttttttaattttttttttctctccctgttttattaaagtttgcTACGGATTTTgaatattgcatttcattatttgctGGTAACCTAGTTCATTATATAAATTGGTTTGTGGGTGTGtccctgtcccccccaccccaccctcctcTTCCCTCCCACTCCCCTGTTGTCATTTTCCTCTTTTTGTGACCTgcataaactgtattttaactGACTTGTacagtcatgtttttttgttttgttttttatatacacaaaaCTGAAGGTTGGATACCATTCAAATGGATTGAGCTTCTAAAAGTAAATCTGTGGTATTGCTTTGTGTGTTCATGACTTTGAAATTGGGTTAATGACCTgtgtttggggagggggggtgggttgACAAGGTAGGCTTAACTTGCTTTTGTTGGAGCAAAATTGTGGgaatcattacaaaaatgtattttattttaccttttcatGTGTCTTTCTATAGACATCTGAAGAGCAGGATTAAAGAATGCTTTGGAATAAAGGATTGTGAAGCACAGTTCATTCATATTAGGATAATCAGAGCGTGTCTAATTGGAGGAGGAGCAGTCAGATCAATAATGGAGGCAATGGTATGACACCAAGTGCTTCAGTCACCTTTAAAAACTTGGCAGTATTGAGTTTGAAGAGACCGTACCCTGGTTCTTTGTCTAAGTGCATAATGCCATAACTCACATGTAGACTGTAAACGTTTTTTTGTGTAGCTCtgctttgccatttttattttgtcacccccccccctcacctTTTTTCTCATTGATCAGTACTGCTAAGCTTGCATGTCCTCTTGTCTGACTGAATGTAGCGATGTTTGTGCACCATATCAGGcaaggattttttgtttttatttttttgtttttaaacccaaGTCCACTTTCTGTTTGAATCTAACAAGCTCATGGTTGTGCAGGATTTGTGTAACTATTTAAAGACCCTAGCATGACATTGAACAGTAAATGTAACAAGTCTGTTGATGTGCGTTACCCAAAACCCTCGTAATGACCCTTAACATAGCGCTCATGTCACTCCCCTCACTTAAAAGAGTCAGTTCTGAAATACACGAGCTGTGGCTTTGGTAACATCCTGTACGAGTAGATCTACAGATGGGCCCAGTGTGATGAAAACATTTGCTTATGTGCTGTGCCATTGACTTGCCTGGGGAGCTGATCATTGTCTGGCATCCTGCATTACAGTTGTTTAGAAAAACCTTTATTTGAATTGATTACCAGCCATATGATCTCCTCCTAggtgcatattttttttaaagagaaaaaaaaaatagctgttTGATTACAGTCCTGATTCTAACTTGTTGCctccttttttttggttttgctgGTATTTGAAGGTTTGGATTGGAGCAGGGGCTCACTGGATCCCAATCCTTGGAGCCGGATCATTGGATCAGTTCATAATCAGGATAGGATAGGGAAGGATGGATTCATGGAGCGGGATCAATTTACCGGGAACCGTAGGAGTGGATTCCCCCCACCAAACCGCATTATCGTGGAATTCAAAACCAActttaagaattaaaaaacaaaaaatatatatatttatacaaaaattGGCTATTcaaaatttttattttttattttttggagccCCAAAGATGCACAGTCATGGGATTtggctttatatattttttattttttgtataagaGGAGCAAAGCGAGGACCAGGAGGCTGGATCAATCTCCTTGGATGGAATCCGCATGAGGAGTTTGGTAAATAGGGAATACAGTGGGAGGGCTGGGTGGGGGTGTGGGTGGTTTGTCCaggttaaaagaaaatacttttcagtTTGGCTGTGGCCGTTATCTTGGTGAGAACAGGTCTGCAATTggtttaatacttttttctcccccctccccccttttagtttgtagtgtttttttttttgttttgtttgtttttgtttttgttttttcacaataaaaatgtaaaaagaaa

Function

NR:

description
PREDICTED: serine/arginine-rich splicing factor 1B

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12890 SRSF1, SFRS1, ASF, SF2; serine/arginine-rich splicing factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005483 True 3273 mRNA 0.46 4 2495360 2501727

Neighbor

gene id symbol gene type direction distance location
AMCG00005482 NA coding upstream 1123 2487213 ~ 2494237 (+)
AMCG00005512 aldoc,LOC107581922,LOC107661747,LOC107587231 coding upstream 10908 2480675 ~ 2484452 (+)
AMCG00005510 NA coding upstream 23509 2460248 ~ 2471851 (+)
AMCG00005511 NA coding upstream 37788 2447382 ~ 2457572 (+)
AMCG00005513 NA coding upstream 50277 2417078 ~ 2445083 (+)
AMCG00005484 NA coding downstream 10495 2512222 ~ 2520954 (+)
AMCG00005504 hnf1b coding downstream 44666 2546393 ~ 2565500 (+)
AMCG00005503 NA coding downstream 64662 2566389 ~ 2569710 (+)
AMCG00005502 synrg,LOC107727910 coding downstream 81672 2583399 ~ 2638908 (+)
AMCG00005493 NA coding downstream 332770 2834497 ~ 2844701 (+)
G152397 NA non-coding upstream 172015 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 1033421 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 1036613 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1241401 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1437965 1057185 ~ 1057395 (+)
G152644 NA non-coding downstream 570223 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 682094 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 697605 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 758483 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 1222186 3723913 ~ 3761827 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 548560 1929455 ~ 1946800 (+)
G152337 NA other upstream 691457 1799811 ~ 1803903 (+)
G152267 NA other upstream 746426 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 977780 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 1116058 1376468 ~ 1379302 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 2183 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 343490 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 764647 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1780790 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 2058486 4560213 ~ 4563020 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019797 srsf1b coding NC_007132.7 CM002905.2 39567505 ~ 39577517 (-)
grasscarp (Ctenopharyngodon idella) CI01000041_00527357_00541059 SRSF1, SFRS1, SRSF1B coding CI01000041 null 526997 ~ 541335 (-)