AMCG00005485


Basic Information

Item Value
gene id AMCG00005485
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2584850 ~ 2585293 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005485
ATGACCAGAGCTCTGAAGCCCTTGTTGACAGGCTTGCGCAGCGCGGCGAGGATGGGCAGGCAGAATGCCACCGTCTTCCCCGAGCCACATGAGTGGGATGGCCTGCATCtggatgggggtgggggcttCGAAGCCGGCCTGGCGGATGTTCTGGATGATGCGCGGGTCGATGCCGTACTCCTCCTGGATCTGCTCGAAGGTGGTCATGGGGTCGGGGACGTCAGATCCGTGGACGTTTATCCTGTTCTGGTGCCGGATTTTATTGACCTGGACGAAGGGATTGAAAACACGGTGGACTGA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005485 True 300 mRNA 0.60 2 2584850 2585293

Neighbor

gene id symbol gene type direction distance location
AMCG00005519 mate4,slc47a2,LOC107599236,LOC107599264,LOC106604060 coding downstream 251954 2331855 ~ 2332896 (-)
AMCG00005520 LOC106604060,LOC107718056,LOC102197200,LOC101483717,LOC102785299,LOC106946208 coding downstream 263207 2308678 ~ 2321643 (-)
AMCG00005521 NA coding downstream 283996 2284444 ~ 2300854 (-)
AMCG00005533 NA coding downstream 362074 2217709 ~ 2222776 (-)
AMCG00005489 NA coding downstream 511554 2070365 ~ 2073296 (-)
AMCG00005505 dusp14,LOC107672422,LOC107727911 coding upstream 65619 2650912 ~ 2651547 (-)
AMCG00005478 tada2a,LOC107661114,LOC106612794,LOC106581187 coding upstream 98344 2683637 ~ 2694104 (-)
AMCG00005477 traf4,LOC106581191 coding upstream 181253 2766546 ~ 2778432 (-)
AMCG00005496 nek8,LOC107672375 coding upstream 225933 2811226 ~ 2821222 (-)
AMCG00005495 zgc:174895,LOC105911024,LOC107580547 coding upstream 271984 2857277 ~ 2863981 (-)
G152473 NA non-coding downstream 139753 2415072 ~ 2445097 (-)
G152452 mate4,LOC107718064,LOC107718062,LOC107699952,LOC106604060 non-coding downstream 266178 2294833 ~ 2318672 (-)
G152424 NA non-coding downstream 408896 2167604 ~ 2175954 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding downstream 638050 1941023 ~ 1946800 (-)
G152335 NA non-coding downstream 832112 1745953 ~ 1752738 (-)
G152652 NA non-coding upstream 574764 3160057 ~ 3160364 (-)
G152661 NA non-coding upstream 598528 3183821 ~ 3184685 (-)
G152665 NA non-coding upstream 615892 3201185 ~ 3201687 (-)
G152736 NA non-coding upstream 721393 3306686 ~ 3308431 (-)
G152793 NA non-coding upstream 1113518 3698811 ~ 3725372 (-)
AMCG00005517 NA other downstream 174603 2406525 ~ 2410247 (-)
AMCG00005532 NA other downstream 255166 2197354 ~ 2329684 (-)
AMCG00005461 eif4h other downstream 861350 1708683 ~ 1723500 (-)
G152271 NA other downstream 969353 1521742 ~ 1615497 (-)
G152277 NA other downstream 1077222 1505940 ~ 1507628 (-)
AMCG00005491 supt6h,LOC107603297 other upstream 287213 2872506 ~ 2890448 (-)
G152645 NA other upstream 486567 3071860 ~ 3090714 (-)
AMCG00005525 LOC106567758 other upstream 1021668 3606961 ~ 3632712 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other upstream 1264843 3850136 ~ 3869209 (-)
AMCG00005539 NA other upstream 1699424 4284717 ~ 4292871 (-)

Expression


Co-expression Network