AMCG00005487


Basic Information

Item Value
gene id AMCG00005487
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2016016 ~ 2043288 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005487
ATGCACAAAACGCGATACACCATGCTGGAAAATGGCTTCAGTTTCTCTCGGCGTGTGGAAGAATTCAAggcaGTGGGGAGCGAGGGGGTGCGGCTGATGATGGAGAGCGCTCTGACAGCGCGGGACCGCGTAGGCGTCCAGGACTTCGTCCTCCTGGAGAACTACACCAGCGAGGCAGCCTTCATTGAAAACCTGCGCAAGAGGTTCAAGGAGAACCTCATCTATACTTACATTGGATCGGTGCTTGTGTCTGTGAACCCATACAAGGACCTGGAGATCTACTCCAAGCAGCACATGGAGCGATACCGAGGCGTCAACTTCTATGAGGTCTCCCCCCACATCTATGCGGTCTCTGACAATTCGTATCGGGCTATGCGTACGGAGCGGAAGGACCAGTGCATCCTGATCTCCGGGGAGAGCGGTGCCGGCAAGACAGAGGCGTCCAAGAAGATCCTGCAGTACTACGCTGTGACCTGCCCCGCTAGTGACAAGGTGGAGTTGGTCAAGGACAGACTACTGCAGTCTAACCCTGTTCTGGAGGCTTTTGGAAATGCCAAAACTCTCCGAAATGACAACTCCAGCAGATTTGGAAAATACATGGATATTCAGTTTGATTTCAagGGGGCTCCGGTGGGGGGGCACATCCTGAACTACCTCCTGGAGAAGTCCCGGGTGGTGCACCAGAATCACGGCGAGAGGAACTTCCACATCTTCTACCAGCTGAtcgagggaggggaggaggacCTGTTGCGCCGACTGGGACTGGAGAGGAACGCCCAACAGTACCAGTACCTTGTCAAGGAGCTGCTGAACATCATCGCCAGCGTGCTGCATCTGGGCAACGTGCAGTTCGCAGGGGACGAGGCGGGCAACTCCCAGATCACCACAGAAACGCAGATCAAATACCTGGCCAGGTTGCTGGGCGTGGAGGGTACTGCTCTGAAGGAGGCCCTTACCCACAAGAAGATCATTGCCAAAGGGGAAGAGCTGATGAGCCCCCTGAATTTGGAGCAGGCTGCGTACGCCCGAGACGCCCTGTCCAAGGCGGTGTACGGCAGGACCTTCAGCTGGCTGGTCAACAAGATCAATGAGTCCCTGTCGTACAAGtgggaGCCGGTGCAGTACTTCAACAACAAGATCATCTGCGATTTAGTGGAAGAGAAGTTCAAAGGCATCATCTCTATCCTGGATGAGGAATGCCTGCGCCCAGGTGATGCCAGTGACATCACCTTCCTTGAGAAGTTGGAGGACACTGTTGGAGGACACGCTCACTTCGTCACACACAAACTGGCCGATGGGAAGACTCGGAAAGTGATGGGCCGCGAGGAGTTCCGCCTCCTTCACTACGCTGGAGAAGTCAACTACAATGTCAACGGCTTTCTGGACAAGAACAATGACTTGCTGTTCAGGAACCTCAAAGAGGTGATGTGTCAGTCCGAGAACAAGATCCTCACCCAGTGCTTTGACAGAGATGAGCTGAGCGACAAGAAACGTCCAGAGACGGGCATGGAAAGGCAGAGAAGCACCCACTCCCAGCGACCTTTGCCAAACTTGCGGTGTGGGGCGGCCAGCGGCCCACCTCCCCAGACTTCCATTGCTCATCGCTGTGGGCCAGGTCGCTTTGATGAAGTTCTGATCCGGCACCAGGTGAAATATCTGGGTCTGATGGAGAATCTCAGAGTGCGTCGTGCTGGCTTTGCCTACCGCCGAAAATATGAAACCTTCCTGCAAAGGTACAAGTCTCTGTGTCCAGAAACATGGCCCAACTGGAATGGGCGACTGGCGGACGGTGTGGCCATCCTGGTAAAACACCTGGGATACAAGCCTGAGGAGTACAAACTGGGACGATCGAAAATCTTCATTCGCTTTCCTAAGACCCTGTTTGCTACTGAAGATGCTTTAGAAGTCCGCAAACACAGCCTGGCCACCACCCTCCAAGCTGCGTGGAGGGGCTACGGTCAGAAGTCCAAATTCCAGAAACTGAGGGCATCTGGCTTCATCTACCGCCAACAACCTCGCTGCCCCGAGAACGAGTACTTCCTGGACTACACCTCTGAGCAGCTGAAGAAGCTGTATGTGCAGAACATGGTGTGGAGCTACTGCAAGAGGATCAACCCAGAGTGGAAGAACCAGCTGGAGCAGAAAGTGGTGGCCAGTGAGATTTTCAAGGACAAGAAAGATAACTACCCACAAAGTGTGCCCAAACTGTTTGTGAGCAGCAGGCTGAgCAATGAAGAAGTCAACCCCAAAGTTATCCAGGCTCTGGGCAATGAGAAAATGAAGTACGGCGTTCCAGTGACGAAATACGACCGGAAAGGCTACAAAGCTCGTCCGCGGCAGCTGCTCCTCACACAGAACTGTGCCTTCATTGTGGAAGAGGCCAAACTCAAGCAGAGGATTGACTACAGTGCCCTGAGGGGAATCTCGGTCAGCTCCCTGAGCGACGGCCTCTTTGTGCTGCACGTGCCCTGCGAGGACAAcaagcagaagggtgATGTGGTGCTGCAGAGTGACCATGTGATCGAGACTCTGACCAAAGTGGCCATAAGTGCAGAGAAGGTgaacaacatcaacatcaaccaAGGAAGGCAGCACGAGATATTCCTGAAGAAGAGCATCTGGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005487 True 2625 mRNA 0.54 27 2016016 2043288

Neighbor

gene id symbol gene type direction distance location
AMCG00005430 NA coding upstream 107306 1897877 ~ 1908710 (+)
AMCG00005457 NA coding upstream 270149 1740671 ~ 1745867 (+)
AMCG00005459 NA coding upstream 281947 1724009 ~ 1734069 (+)
AMCG00005458 rfc2,LOC107669364,LOC107561059 coding upstream 318873 1692137 ~ 1697143 (+)
AMCG00005441 NA coding upstream 344655 1667718 ~ 1671361 (+)
AMCG00005486 NA coding downstream 5760 2049048 ~ 2055591 (+)
AMCG00005456 NA coding downstream 39946 2083234 ~ 2089877 (+)
AMCG00005455 LOC106612657 coding downstream 55756 2099044 ~ 2120874 (+)
AMCG00005527 pitpnab,LOC108410689,LOC105890453,LOC101470402,LOC100703534,LOC103045464 coding downstream 114674 2157962 ~ 2170629 (+)
AMCG00005528 NA coding downstream 130777 2174065 ~ 2200981 (+)
G152198 NA non-coding upstream 554077 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 557269 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 762057 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 958621 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 1001636 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 212077 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1028662 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1140533 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1156044 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1216922 3260210 ~ 3260429 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 69216 1929455 ~ 1946800 (+)
G152337 NA other upstream 212113 1799811 ~ 1803903 (+)
G152267 NA other upstream 267082 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 498436 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 636714 1376468 ~ 1379302 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 460622 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 801929 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 1223086 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 2239229 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 2516925 4560213 ~ 4563020 (+)

Expression


Co-expression Network