AMCG00005490 (sdf2,LOC106602908)


Basic Information

Item Value
gene id AMCG00005490
gene name sdf2,LOC106602908
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2893305 ~ 2896669 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005490
CCGGGCTGCGGGTGTGGTGACGTAGGCAGGGTGCCGTGTCTCGGCGAGGTCGCGGTGAGCAGTGATGGGACACTATGCCGGTGTGGTGCCGCTCCTGGTGAACGCCTTGCTGTTTTCTTGTCTGTCGGCCCTGTCTCAGGCGACGGAGCTGCAGTTCGTGACCTGCGGGTCCATCGTGAAGCTGCTGAACATCAGACACAATGTCCGCCTGCACTCGCATGACGTCAGATACGGCTCCGGCAGCGGGCAGCAGTCGGTGACCGGGGTCACGGCGGTGGAGGACAGCAACAGTTACTGGAGTGTGCGTGGGACGAGCGAGTCGGTGTGCCAGCGGGGGGAGCCGGTCAAGTGCGGCCAGACCATCCGACTCACGCACGTCAACACGGGCCGCAATCTGCACAGCCACTACTTCTCCTCGCCGCTGTCTTCCAACCAGGAGGTGAGTGCGTTCGGGGAGGAAGGCGAGGGGGACTCTCTGGACGAGTGGACGGTGCTGTGCGGGGGGGTGCTGTGGGTGCGCGAGGAGAACGTGCGCTTCCGCCACACGGCCACCGAGGGGCTGCTGTCCGTCACGGGAGAGCAGTACGGCCGCCCCATCCACGGGCAGCGCGAGGTCCACGCCATGCCCCAGGCCAACCTGCACAACTATTGGAAAGCCATGGAGGGGGTATTCATGAAGCCCAGCGAGACCCTGGGCCGAGATGCCGCAGCACACACCGAACTCTAACCGGCGCCCAACTCCTCCCTCTCTCGACACTACAGACTGGACGGGAAATCAGACTTCCTTTGTATCACACAATGACTACCCACGATGTTCCATTCCAGTTTGACTTCTAGGTCAGCCTAAAATCATCAATTTCTAAAGACTGGTGGGAACACATTATATCACTTCATTAGGCAAGTGCAGTTCCTTTTTTTTGGTCAGGGGAACTCTTATCATTGAGGGCTGAAGGGGCATTGAGGTGTTCGTTCTGAACGTCTCTAACAATGCCGCATTGACCGAAACGCTGCCTTTTTACCTGATCAGCGGTAAACGAGTCCAAGTCTTGAGTTGATGATCTCGGGGTGATCTATAAAAATGTACTGGTCTCCCTTGCTCCCTCCCACTTTGCTCGCCCGGCCGTCGCTGAGTTGCAATTGCTTCTGCCCGAGTTGTTCCGCACGTCTCCCCTGCAATCCCCATCCGAGCGTCCCGGTGGGTGAACGGTtgagctcacacacacaaacgcactcGTATCAGCCGGGTTCTGCTGGCGTTTGCTCTTCCGCTTCAGCACTGTCATGCGGACACAAGAGTCCGAAGCGCGTAAAACCTGAAATGGACCCGGCTGCCCTTGCATGATAGAGCTACCAGAGGGTTTGGAGGCTTGCAAAGGGGGAGCCAGAAAATAGGATCTCGTCATCCTTTCCAATGCACTGTCCTGccacaataaaatgcaattcagtTTTGGCCAATCGGAGCTTTTGAAGATCTCGTAGAAAAAGAACGGCTCAATAAGGCCTGTAATTGACAACCCCCTGCAATCAAACGGATATTTGCTCTTTTATGATTTACAGAGAGAAAATTGATACTGTACAAATCTAAAATAACCACCCCAATTTTTGCGACCAGTCGTCCAAACAGTGCCAAGCCGGAGGGAGGGTCAGGAGAGGAGGGAAGTGTGCGACTCTGACGTCAGGGAGTTTCTTTAagttcatctttttttttcagaggcgcttttgtttctgtgttgctttttaaagGTTCACTGTGACAAACTCTGCTCCGCCTCGTTCTCCGGTGCTGGCGTCTGACAGGGACCCCTCGAATGTCCTTTCTCCACCCCGTTCTCTACAAGTATTAGGACCTAGCATATGTATCTCATCTTGCTAATTCAGGGTACCGCAACGCCCATGTTCACTTTGCACACCCTAAGTAACCTCTCCACACTACCGGTGTTACAGCCTAGACCTCAAAAGGATCACAGATGtcattgtcttcattttttcGGCCCCAAAAAGGCAGGGAAGCACATGTTCAAAGAGGCGAGCAGCTCCAGCTTTAGGTGTGTAGCTTCCTTTTGACACACgccatatttatttcattttgagaacaagaacaaaacacacgAGTGCAATAAGaccatttaattgtattgttaattcTGTAGTCAGTATTGTTAATTGGAAGCAGCAACATTCTCACATAGGGATCTCCGAACGTGGTCCTGCAGAGCCCAGTGCTACAGGTTTGACAGCCTGACCTCAGACAGTTGCTATCTTGACTGGCTAGGCTCATAATTGGTTTAGATAAGTGATTGAAATTATGATTAGAAAGCCCTGCTGCTCTCCGGGACCAGGATTGGAGACCCACACTCTAAGGTAATTCAGTGTGGGATACCATAaccgtttagttttttttttttgaatgggtgaatatcgtttttttttttctatttgttacAAAATTGGATTTCATCAATTTGTATGAGAagttaaactgtttaaatacctcaaataaatcattttattga

Function

symbol description
sdf2 Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be involved in protein O-linked mannosylation. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human SDF2 (stromal cell derived factor 2).

NR:

description
PREDICTED: stromal cell-derived factor 2

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005490 True 2513 mRNA 0.51 3 2893305 2896669

Neighbor

gene id symbol gene type direction distance location
AMCG00005492 NA coding upstream 21432 2866971 ~ 2871873 (+)
AMCG00005494 rab34,LOC108443499,LOC102306323,LOC102777300,LOC108278203 coding upstream 36193 2850092 ~ 2857112 (+)
AMCG00005493 NA coding upstream 48604 2834497 ~ 2844701 (+)
AMCG00005502 synrg,LOC107727910 coding upstream 254397 2583399 ~ 2638908 (+)
AMCG00005503 NA coding upstream 323595 2566389 ~ 2569710 (+)
AMCG00005509 NA coding downstream 255012 3151681 ~ 3171935 (+)
AMCG00005506 NA coding downstream 276910 3173579 ~ 3179680 (+)
AMCG00005507 nlk coding downstream 304832 3201501 ~ 3202760 (+)
AMCG00005508 nlk,nlk2,LOC107682651,LOC107756449,LOC107666197 coding downstream 333020 3229689 ~ 3256106 (+)
AMCG00005499 NA coding downstream 388201 3284870 ~ 3295314 (+)
G152397 NA non-coding upstream 569960 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 1431366 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 1434558 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1639346 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1835910 1057185 ~ 1057395 (+)
G152644 NA non-coding downstream 175281 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 287152 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 302663 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 363541 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 827244 3723913 ~ 3761827 (+)
G152588 rpl23a other upstream 43697 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 382629 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 946505 1929455 ~ 1946800 (+)
G152337 NA other upstream 1089402 1799811 ~ 1803903 (+)
G152267 NA other upstream 1144371 1745960 ~ 1748934 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 369705 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1385848 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 1663544 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 2318144 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 3537852 6434521 ~ 6437078 (+)

Expression


Co-expression Network