AMCG00005492


Basic Information

Item Value
gene id AMCG00005492
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2866971 ~ 2871873 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005492
AAGCGGTGCTGTCTGCGGGCTGGTGGTGCTGAAAGTGCGGCTCCAGTCATGTGGTCCGTGTTCCTCGTCTTCCTGTCTTACCTGGACAGAAACCTCGCCCAGGGGGGGTTCATGAGCCCCTTTGTGGAGGTGGAGAAGGAGAGGAACGAGTTCTTCTACATGCTCAACAGCACCTTCTGCGCCAAGGGCTCCAGCCTCGACGGCAATGCTCTGCACCAGGTGTCGGACGGCATCGAGGAGGTGCGCTCGGTGCACGACCCCCACGGCAACCTGCTGGACTGCTCCGTCATCGACAACCAGATCGCGGTGAAGGCGTTCATGCATGTGTGCCGGCTGGGGCTGCGGGACCGGAGGGGCGGCGGGAAGCCCGAGCGGTCGGAGCGCAGCCTGGTGGATGTGGCCAGTGCCAAGTCCAACTGCCAGGCGTTTAGGAGGTCCAAGAAAGTCAAGGCACCCGAAAAGGCTCCCCCGGTTCCAGAAACACAGACTCCGGgggaagaagggagagagggcCCTGACACTGAGGAAGGCAGCCAAAATCTCCACAGGAGTAAGAGAGGCTTTACATACCCGGGCACTCTGTGGTGCGGGGCCGGCAACAGTGCGGATCACTATGACCAGCTGGGTGAATTCGCTGAAACCGACAAGTGCTGCCGAGTGCATGACCACTGCCCTTACGTCATCCACCCCTGGGCATCCAAGTACGGGTACAGGAACTACCGCTGGCACACGATCTGCCACTGCGAGTGCGACAACGCGCTGAAGGAGTGTCTGAGCAATGTCAATGACACAGCTTCCCGGGTGGTCGGCCAGGCCTTCTTCAATGTGATAGAGGTGCCCTGCTTTGAGTTCACATACGAAGAGCAGTGTGTGGAGCGGCTGTGGTGTAAAAAGTATGAAACGGTGCCCATTGCAGTGGCAAGAGAATCAATCCCTTATGACTTTGGGGGGATTGATGTTATCGATGAACTAACTGTAGCTCCGCCATTGAAAAAACAAGACGAGAAGGATGAAAGCAAGGAGGGAGAGCCAGTTCAGCCATCGGCTTCCAGCGCCCAGGCCACAACTCCAGAGCAGCCGTCGCTTGGCAATGTGGTGACCGCAGCAGAGGACTTCATTAAAGTGCTGGCGACGGTCTCCTCCTCACAGTCCAGCTCCTCCGAGGGAGCCAAGGAGGACACGCAGAGCGCcgacaagaagaagaagaagaaaaacgataagaacaagaagaagaagaagaagaagaaggggaaggggaagaagaaggggaaggggaaggggaaagGACGGAGGAGAAAGCAAAGAATCAACATCGTCTCCAAAGCGGAAGAACCCGTGGCCATTAcacccagcagcagcagcagcaaccgGGCCGAAGAAAGACCCGAGAAGGACGTTTTCGTGGAAGACATGGGTAAATTTGACCATGGGGTGAAATTCGCCAATGTGGACAATATGCACAATTTCATGGACAGCGTGTTGGACCTGGGAGGCAACGAAGATCCTTTCAATGACGTCATGAAAGACGAGCCGGTCCGAGAGAGTAGCAGCACCAGCACGCTGTCCCCTGCTAAAACGGAAGCCACGGAGATAGTCCATCAGGTGGAAGAAAATGGAAAGGGATCTCCCACAGTGTCACCCAGTAAACCCACTTCCAGACCTTTAAAAACCAAAAGACCAAGGTCcaaaggaagaaaaggaaagaagaggagaaaatTATCTCCTAGCACAACCTCCTCACCTGCTTTTGTATTCTAGTGTCATAGTTTAAGTAGGGGAACCAAGAGCGCATGACGCCCAACAGCGGCCGAACCAGCTCTTAACTGGGGAAACATACAGTGCAAAAGCCAATTCCTTCTAGTTTGTTAAACTACATATACATCAGATTGCAATGAAAAGCATCGCATGCAGATTGAGCTCGACACGACTGATTTTGCTGCCTTCTTTGAAAGCCGTTTGATGGACTGTACGCCTCGCTGTTGGTCGTACATTCaaggagagcagagagaggctTGACGCGTGACGAGTGACCCTGTTTGCGATCAAGTTTGAGTGATAAAACGATCTTGTTGATTGGAAGTAATGCGAAGCTTGGCCTATTTAAACGTAAACCAAGTGTaatctgaataataattataataaacttcTTAcacatttgtggttttctttgcATGGATGTCAAATCAATACAGACAATTTAGGTTTTCAGTCCTTAGTTACTTCAGCTCATAGCAGGGGGGGAAATGCCAAGTTGTGCGAAAAGTgtattcaatttgaaaacacAATGCACTTCATTATACAGGACATAATCTTGTGGCCACACCACTTCGCTGCAGGCTTAATTCAGTGCCTGTTAATAACGCCACCTTAGTTTCTTTGGCGAGAGATTATATCGTTCATTTAACATTCCAGCgttatttaccattttattctttgtttagTTAAGAGACTTTGACCACGAATCATGCCATGTCTGTCAGTAATACGAGGGGGATATTCCTAATGAGGGATAATCCTCTTCTTCTTTATGGCACTCGATTCCCTCGTGTTAATAGTGTACGGTTACTCCTggcacaggaagaaaaaaatcacactgaAGCCACTCCGCTATAAATCCCAGATCACCTGACCTTCATACGTTTCGTGGCATCAGATAATAAATTAATCCACTTCTAATAGTGGAAGCAAACTACTACATTCATAGAACAAAAGTTAGTTATTTTATGCTTTACTTTATGATTAAGGACACATTGTTGGGATTCTAGAAGAACAGTGTGGGATAGTTAGGACAGACAGTATTCTGCACACAACTTGCACTCAGTATACCACACagtattaaagtattttgtgtagaatttcaacACAGGTGTAATCAGACATACACGATGTAAAAGGGAGGGAACTGCAACCATGGTTTTCTATTGCATAACTACAAACCCTGTAATTAATTACACATATGTAAGTAACATTGTCTTAATATCAGTAACCTGGCAGCTGATTAATCTTTCATTTGGGACTTGAAGTGTTGTGTAAGGATTTGTTGGATTGGTTTGAAGATCTCCTCAATGGATAAACATGTAGAAGTGAATTTGCCAGGAATCCAGTCAGCAAGGTCCTTCTTCACATTAaagatttcacattttcctCAATTGAAAGTTCCTGATAAATGCAACCTGGAGCCATTCAGGGGTTTTATCTCCCGTATTCTTACCTCTTCCAGGTAATGTTGGAAACACACTACAATGCTTCTAGGCTGATGCTGGTTTAGGGTGTACTGTATTTTTCTGCGAGTGTGGCGCAgtaaaaaaaagtggaaaaagctCA

Function

GO: NA

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005492 True 3324 mRNA 0.48 4 2866971 2871873

Neighbor

gene id symbol gene type direction distance location
AMCG00005494 rab34,LOC108443499,LOC102306323,LOC102777300,LOC108278203 coding upstream 9859 2850092 ~ 2857112 (+)
AMCG00005493 NA coding upstream 22270 2834497 ~ 2844701 (+)
AMCG00005502 synrg,LOC107727910 coding upstream 228063 2583399 ~ 2638908 (+)
AMCG00005503 NA coding upstream 297261 2566389 ~ 2569710 (+)
AMCG00005504 hnf1b coding upstream 301471 2546393 ~ 2565500 (+)
AMCG00005490 sdf2,LOC106602908 coding downstream 21432 2893305 ~ 2896669 (+)
AMCG00005509 NA coding downstream 279808 3151681 ~ 3171935 (+)
AMCG00005506 NA coding downstream 301706 3173579 ~ 3179680 (+)
AMCG00005507 nlk coding downstream 329628 3201501 ~ 3202760 (+)
AMCG00005508 nlk,nlk2,LOC107682651,LOC107756449,LOC107666197 coding downstream 357816 3229689 ~ 3256106 (+)
G152397 NA non-coding upstream 543626 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 1405032 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 1408224 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1613012 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1809576 1057185 ~ 1057395 (+)
G152644 NA non-coding downstream 200077 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 311948 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 327459 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 388337 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 852040 3723913 ~ 3761827 (+)
G152588 rpl23a other upstream 17363 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 356295 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 920171 1929455 ~ 1946800 (+)
G152337 NA other upstream 1063068 1799811 ~ 1803903 (+)
G152267 NA other upstream 1118037 1745960 ~ 1748934 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 394501 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1410644 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 1688340 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 2342940 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 3562648 6434521 ~ 6437078 (+)

Expression


Co-expression Network