AMCG00005493


Basic Information

Item Value
gene id AMCG00005493
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2834497 ~ 2844701 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005493
GGTTCAACaacaggcacagacacacacaaacacaatcataaaatcAAGTTGAATCCTGCAATGTGACGGCCAAATATTAAGAGCAAGCCCACTGGCCCGTCTCAGGAAGTGAGAAATCTGAGAGCTGCTGTTACTGTTGCACGCTgatgctggagagagagagagagagagagagagagagagagagagagggagagtctGGAAAAAGTTACCAACTCCCCTCCTCCCTCGCTATTGCTGTCACTCCCAGAACCTCACTGACACAATCCTGCCTTCCTGCCTCAAATATCTACTGGACCTTTAACTAACCAAAGCAGAAGGggagcaaagaaagaaaaacaaaaaactacataagaggaggaggaggaggaggaggaggagaactGGACCCAGGAGAAGATGGAGTTGTCTTGGATGTCCCTGCAGAACCACCCCACCCTGTCCGTGGCCATGAGCAGCGTCACGTTTCGGATCATCCACCGCTTGCTGCAGGGTCTGCCTCTCCCCAAAGCGGTGGAGCGGGATGCGTTCAAGTCCTGGAAGTGGAGGAACCTCTCGGTGTCTCTGGTACACTCGTTACTCACCGGGCCCTGGGCGGTCACTTGTGTGATTCTATGGCCAGACCTGCTGCACAAAATACATTCCTTCTACACCCCACTGACTTATCTCCTAATCTGTGTCTCCTCTGGGTACTTCATACAGGACGCCGGAGACATCATCCTGAGTGGTCAAGCTAGGGCATCGTGGGAATTCCTACTGCATCACGCTCTGGTGACCTGGTGCTTCCTGTATGGCCTCTACACCAAGCACTATGTGGCGGGGGCGGTCATCGCGCTGTTCGTGGAGGTGAACAGCATCTTCCTGCACACCCGGCTCCTGCTGAAGCTGGCGTGCGCCCAAGCCTCGCCGCTGTACCACATCAACAAGCTGCTCAATCTCTTCACCTACGTGTTCTTCCGCCTCAGCGCCCAGTTCTACATCACCTGGTACCTGCTGCGGCACTACGCCACGCTGGACCACGCCGGCTACTTCCTGGCCACCATGACCCTGATGAACATCATGATCCTCATCTACTTCTACCGCCTCCTCCGCGCCGACTTCTTGCCCCGCTCCAGGAAGCACTGCGCCCAGAACGGCACCCGCAACGACAAGTTTGTGTACGACTGACAGGATCGCGCCCcaacccaacccccccccaaccccaccacCAGCACTTGTTTGCAGAAGTGGTGTCCTTATCCACCGCTTCTCTTTCAATGACTTCCAATGTCCACACCCACACGATATTTATTTTTCGACTGCAGACCTTGAATGGCGTTTGATTTACGGCCGCCTTCCTCCTGTTTCCAGTTCTAAAACCGAGCTTGTTGTTGCTTTAGCAGCCTGTGGACAACCCTGTTTTATATGTTGAAAGGAAACGCACAAAATATAGATAAAATACCCTGACCATTGCAGGGTGGAATGGACTTGTTTGCACTTTTTTTGCAAGCTCCTCCTGTATGATACTCAAAGCAATGGGGTATGATTCTGTAACATGAACATTACGGGATTCTTGGTGTAGACACAGCTATCTACCGTACTTTTCATGTCTAATAATAGAGAGTACTAAAATACGTcttataaaatatttgcatttctaaCTTTCATTGTGTATGGAAAGTAATGTCATATCTTAATCGCTCCTAAGAGAAACCATTATAATGCTTATTCATACACAGTCAAGAGACAATTCTCACATTTAGAGGAGCTCAACCAATCAGtgaaatgaagaaataattCCTGAACAGTTAAGTGATAAACCTTTTTTATACACGACTATTGAGGATAAAAGATGCCGCCATTCAAATCTTGCAGATACCGTAAGAGACGATCGCTCCCCCAGACACGCACACAACCAACGCAACAAAGCTGGTTTCATAAGGAACAGTTACAATGGTAACAGTATATATTCCAAAGGCCAGCTATTCTTCGCAGCAGGCAAAGCTGGGGGATGAGTTAATGAATGCATCATCAGTTGGTTTGCGGGTTCTGGCAACACCACTCGAATGCCATTACAGTAGGTAGCACAGCGGGGAAGTAGGGTGGCTTTCTGTGAACCACTGTGCACAAAAGCTGCGTCCGAGCCCTGCGGATAATGGCAGGCTTGTGCAAGGAAAGGAGAACTGCTACAGGTTTTCTTCCTTGTGCATGAAAGCCCGACTGTCAGCGTGGATCTCGTGGGCAGACATGCCAGGCACAGCGCAACACTTGTCATACTAAATGCACATCACTAAGATTCTCACTAGAAGGGTCCAGTCACAGAGGGACTAATTTCATTCTTTCAGGGCAATGACAACCACTGAAGCACTCAATTTTATCGTCGTTTCCCTACTCTTAGTTAGAAACCTGCTGGCAGTGTTTGGAAGCTTTATTGAGTTTGTACTCAAATGCACACAACCTGTTACCATACACAGTAAGTGTCATCTGTGTAATTCCTTTGGCAtgactttgaaattaaatgtttacaagC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005493 True 2509 mRNA 0.49 4 2834497 2844701

Neighbor

gene id symbol gene type direction distance location
AMCG00005502 synrg,LOC107727910 coding upstream 195589 2583399 ~ 2638908 (+)
AMCG00005503 NA coding upstream 264787 2566389 ~ 2569710 (+)
AMCG00005504 hnf1b coding upstream 268997 2546393 ~ 2565500 (+)
AMCG00005484 NA coding upstream 313543 2512222 ~ 2520954 (+)
AMCG00005483 LOC108431323,LOC108278759,LOC100705065,LOC107714048 coding upstream 332770 2495360 ~ 2501727 (+)
AMCG00005494 rab34,LOC108443499,LOC102306323,LOC102777300,LOC108278203 coding downstream 5391 2850092 ~ 2857112 (+)
AMCG00005492 NA coding downstream 22270 2866971 ~ 2871873 (+)
AMCG00005490 sdf2,LOC106602908 coding downstream 48604 2893305 ~ 2896669 (+)
AMCG00005509 NA coding downstream 306980 3151681 ~ 3171935 (+)
AMCG00005506 NA coding downstream 328878 3173579 ~ 3179680 (+)
G152397 NA non-coding upstream 511152 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 1372558 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 1375750 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1580538 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1777102 1057185 ~ 1057395 (+)
G152644 NA non-coding downstream 227249 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 339120 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 354631 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 415509 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 879212 3723913 ~ 3761827 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 323821 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 887697 1929455 ~ 1946800 (+)
G152337 NA other upstream 1030594 1799811 ~ 1803903 (+)
G152267 NA other upstream 1085563 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 1316917 1509502 ~ 1517580 (+)
G152588 rpl23a other downstream 516 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 421673 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1437816 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 1715512 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 2370112 5214813 ~ 5241776 (+)

Expression


Co-expression Network