AMCG00005494 (rab34,LOC108443499,LOC102306323,LOC102777300,LOC108278203)


Basic Information

Item Value
gene id AMCG00005494
gene name rab34,LOC108443499,LOC102306323,LOC102777300,LOC108278203
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2850092 ~ 2857112 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005494
GGCTCTGCGCCGCTCCTCCAATGGGATCGCAGAgactgtgcagatctgcgcccAACTGCGAAACCTGCGCAACAAGAAGGCGCCCTGAGCCTGAGTCACTGTCTCGCTAATCGGAGACATCTGTCTGCAGCCCGGCAGCACCGAGGTCTGCGCCCAGGACGGGAGTCGGACACACGGGGATCCCCGGGCTGCACTTTGCGCGCAGACGGCAGTGAAAGCGACGCCTAACAACTGGCCGCGTTTGCGCCTGAGTGACGGAAGACGAGCCCGTGTCGTGTCGAGTCTCCGTGTCTCGACCCAGTGTGTCCAATATGAGTGTCCTGCCTCCAGTCAGAAGGGACCGCGTGATTCCTCAGCTTCCTCAGTGTTTCTCCAAGGAGGCCGCCCTACACACCAAGGACAGCTTCGACGGCAAAGTGAAGACCGCCTGTCAGGAGCAGCGAACCGGGACAGTGGGGTTTAAGATTTCTAAGGTCATTGTAGTGGGAGACCTGGCTGTGGGAAAAACCTGCTTGATTAACAGGTTCTGCAAGGACGCCTTTGACAAGAACTACAAGGCCACCATCGGGGTGGACTTCGAGATGGAGCGGTTTGAGGTCCTGGGGGTGCCCTTCAGTCTCCAGCTGTGGGACACTGCCGGGCAGGAGCGATTCAAGTGCATTGCCTCCACCTACTACAGAGGGGCGCAAGCGATCATAATAGTGTTTGACCTGAATGACATCGCCTCCCTGGAGCATGCCAAGCAGTGGCTCGAAGATGCTATGAAAGAGAACGATCCCACATCTGTGTTGCTCTTTCTCGTGGGAACCAAAAAAGACCTAAGTTCTCCAGCTCAGTATTCGCTGATGGAAGAGGATGCCATCAAAACGGCCAAGGAGATTAATGCGGAGTACTGGGCCGTGTCTGCCCTGACAGGGGAGAACGTGACGGAGTTCTTCTTCCGCGTGGCGTCCCTGACCTTTGAGGCCAACGTGCTGGCCGAGCTGGAGAAGACGGGGGCCCGGCGGATCGGCGATGTCGTCCGGATAACCAGCAATTCCAATAACGTGTACACAACCTCCAAGAAAAAACAGCCCAACTGCTGCCACTGAAGATGTTGCACAGTGGCTTGATGTTTTTGCACTAAACTGAAAAGGTACCAAAGAAACTGTGTGGCAGACCTACCAAGAATAACTGCACAGGGAATAAACAGCCAGTCAACTCTCTGCTCCTCAAAAGACACACCAGTCAGAAAATCCAATAGTCTGTGCTTTGACGAGTCCGtagaaatcaatacaattgtTTCAGCTGGTCCTGAAAGTTGCGCATGAAAATCTTAGCAATGGGTGTATAGATCTCTACTTTAGTGGGTGaacagtgttttgtgttttagacGGCCCATTGTGTCTAAAAGGTAGAAGTACAGTAATGTGTGCAATATGAACTAACTACTGGTTGTGTATGGTGCAAATAGGACAATCACATCGTATATAAACGTCAAAGAAAATGCCTAGTGATTTGTAGGTGAATTGTATTCACTGTGAACAGAGGAAAATACTTGTcaagttattttgttgttctttagttttttgttttgtgaatggaGTGCTACATATAATACTATAATTTCCACGACTGCCCCTGTTCTAACCTCCGATTTACTTCCTGAAGCATCAGGTTACCAAGCCAAGAGAAAACTAAGGTACTCTGGATgaattatttagtatttttagaCACCTCCTCAGATTTGCATTAAcataaaactttacattttaaaactggtgTTCTGTTTTTATGCTCAGTGTCCTGATTGcagatttgttgtgtttttatgtctgAAAGGTCTCCTTGTTTTTATATGGATAATAAAGTGTTTCAAAAC

Function

symbol description
rab34 Enables GTP-dependent protein binding activity and small GTPase binding activity. Involved in several processes, including Golgi to plasma membrane protein transport; lysosome localization; and phagosome-lysosome fusion. Located in Golgi cisterna; perinuclear region of cytoplasm; and phagocytic vesicle.

NR:

description
PREDICTED: ras-related protein Rab-34-like isoform X2

GO: NA

KEGG:

id description
K07921 RAB34; Ras-related protein Rab-34

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005494 True 1861 mRNA 0.49 11 2850092 2857112

Neighbor

gene id symbol gene type direction distance location
AMCG00005493 NA coding upstream 5391 2834497 ~ 2844701 (+)
AMCG00005502 synrg,LOC107727910 coding upstream 211184 2583399 ~ 2638908 (+)
AMCG00005503 NA coding upstream 280382 2566389 ~ 2569710 (+)
AMCG00005504 hnf1b coding upstream 284592 2546393 ~ 2565500 (+)
AMCG00005484 NA coding upstream 329138 2512222 ~ 2520954 (+)
AMCG00005492 NA coding downstream 9859 2866971 ~ 2871873 (+)
AMCG00005490 sdf2,LOC106602908 coding downstream 36193 2893305 ~ 2896669 (+)
AMCG00005509 NA coding downstream 294569 3151681 ~ 3171935 (+)
AMCG00005506 NA coding downstream 316467 3173579 ~ 3179680 (+)
AMCG00005507 nlk coding downstream 344389 3201501 ~ 3202760 (+)
G152397 NA non-coding upstream 526747 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 1388153 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 1391345 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1596133 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1792697 1057185 ~ 1057395 (+)
G152644 NA non-coding downstream 214838 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 326709 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 342220 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 403098 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 866801 3723913 ~ 3761827 (+)
G152588 rpl23a other upstream 484 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 339416 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 903292 1929455 ~ 1946800 (+)
G152337 NA other upstream 1046189 1799811 ~ 1803903 (+)
G152267 NA other upstream 1101158 1745960 ~ 1748934 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 409262 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1425405 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 1703101 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 2357701 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 3577409 6434521 ~ 6437078 (+)

Expression


Co-expression Network