AMCG00005495 (zgc:174895,LOC105911024,LOC107580547)


Basic Information

Item Value
gene id AMCG00005495
gene name zgc:174895,LOC105911024,LOC107580547
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2857277 ~ 2863981 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005495
ATTGTAGCCTAGTTTGGGTCTGCAGCCAGTAAAGTGCAGAGGACATAAGAGGGCGGAAGACTGAATAACCATCCCAAACGCTGGAGCTGGCATTTGGAGGGGGGCCCTGCAGCTTGGCATGCCACTGTAGTTAATAAAAAGCAGTCCAAAGGACAGCTGGGTAGACCTCATCCGTTCATTGTCTCTCAAACTGACAAGTTTTGCTTTCTGAAGCTGAGCAGAGAATATAGCCTTACAGCCCTGCCCGTCTgtgtgcctgtgcctgtgcctgGCAGTTTGGATCAGCGCTCCCTGGAAAATGCAAGTGTGGGATGTCCCGCAGCAGCGCAAGAGAGGATGGTACCTGTCTCTCATGGCTCCAAACACCAAGGGACCAAAATGTTCCTGGCTGGACCCATCGAGGCTCTACTGCAACCACCAGGCTTTGGCAGACTGTGTAAGAGACCTCCTCCATCCATTCTGCAATGATTCAATTGACCTGGTGGCTGGCATTGACGCCATGGGATTTATTCTAGGTTCTGCAGTGGCCACCAGTCTGGGGAAAGGCTTCCTGACCATCCGTAAAGCAGGTCACCTGTGTGTGGAGACCCAAACCCAGGCCTACAGTGACTATTCCGGCCGGGAGAAGCTGATGGAAGTACGAGTTGATGTGTTGAAGCCAGGGCTGCGTGTGTTGTTGGTGGACCAGTGGATTGAGACTGGGGGCACCATGAGGGCAGCAATTAAAATGGTGGAGGAACAGGGAGCTACCGTGGCAGGGGTGGCTGCGGTTGCCATTGAGAATACTGAGGGCGGGAAGTGGATCAAGAAGCAATACAAGTACTCCCAGTGTGTTCCCGAGCAGCTGCAGTCTCAGATTGATCAGCACTACCTGCAGTCCTTCGAGGCGTTCGAAAACCCGATCATCTgaaccccaacacacacacacacacacacacacacacacacatgctgcaCTGGGATATCTGTAGCCATTCAGTTGTAGGGTAGTTATTTGGGGCTTTGGGCTGCTGAAAGTTATGCCCTGGTGTCTTTGAGACAATATTTAGtggatcatttattttaaatcacacagtTGTATCAAACCCATAATTCGTAAAGGAATGGCTTCAGAGAGGCTACTGCCACTGTAAAGACACAAGGGGGTGCTCTTTTACCCTGGTTGTCCTCCAATACAACCCTTTAGGAACGGGGTTGGACCCTGGTACAGGACAGCCTCAATCCAGCTGCTTTTATAGGTCAGCTTAAAATAACCAATTTGCAACAAACGTGGAAATTtgcaattcagatttttttggtCAATTCAGTCCGATATCAAACTTCAGAGTAGATTTCCTTGACTTGAATAAGTGACTGTGCTAGTTTTAATAAACCATCAGGCAGCATGTGTTCTTAGTATTTAGAAAACAGGTAAGATATACAACTAGGATAATTAATTATTCTATTGCCAAATTAATTGTGCCACAAGAAACCCTGTTTTGAACTGATAAAGGCGATCAGAGTATCTTAAGAGAACAGCACCCCCCAGTGGATTGACAGACGGTGATACAAATGCAACAACTTGTAACCTTTCACTAATGAAGTTATTGATTTCTTCCAGTTACAAGCAGACTATAACCAGAAATAGTGCCTTCTTAATACTCAAGCACAGCCAGCAAGATCATAACTTtaatatgcattcaattatctttagctttcttttttttttttttttttt

Function

symbol description
zgc:174895 Predicted to enable adenine phosphoribosyltransferase activity. Predicted to act upstream of or within nucleoside metabolic process.

NR:

description
uncharacterized protein LOC100126024 isoform X1

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0016740 transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005495 True 1717 mRNA 0.46 6 2857277 2863981

Neighbor

gene id symbol gene type direction distance location
AMCG00005496 nek8,LOC107672375 coding downstream 36055 2811226 ~ 2821222 (-)
AMCG00005477 traf4,LOC106581191 coding downstream 78845 2766546 ~ 2778432 (-)
AMCG00005478 tada2a,LOC107661114,LOC106612794,LOC106581187 coding downstream 163173 2683637 ~ 2694104 (-)
AMCG00005505 dusp14,LOC107672422,LOC107727911 coding downstream 205730 2650912 ~ 2651547 (-)
AMCG00005485 NA coding downstream 271984 2584850 ~ 2585293 (-)
AMCG00005479 NA coding upstream 128436 2992417 ~ 3005846 (-)
AMCG00005480 NA coding upstream 287063 3151044 ~ 3151919 (-)
AMCG00005501 LOC108435815,LOC107756385,LOC107666187 coding upstream 485976 3349957 ~ 3365350 (-)
AMCG00005497 msi2b,LOC105028669,LOC106603292 coding upstream 702856 3566837 ~ 3568504 (-)
AMCG00005524 NA coding upstream 719420 3583401 ~ 3604355 (-)
G152473 NA non-coding downstream 412180 2415072 ~ 2445097 (-)
G152452 mate4,LOC107718064,LOC107718062,LOC107699952,LOC106604060 non-coding downstream 538605 2294833 ~ 2318672 (-)
G152424 NA non-coding downstream 681323 2167604 ~ 2175954 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding downstream 910477 1941023 ~ 1946800 (-)
G152335 NA non-coding downstream 1104539 1745953 ~ 1752738 (-)
G152652 NA non-coding upstream 296076 3160057 ~ 3160364 (-)
G152661 NA non-coding upstream 319840 3183821 ~ 3184685 (-)
G152665 NA non-coding upstream 337204 3201185 ~ 3201687 (-)
G152736 NA non-coding upstream 442705 3306686 ~ 3308431 (-)
G152793 NA non-coding upstream 834830 3698811 ~ 3725372 (-)
AMCG00005517 NA other downstream 447030 2406525 ~ 2410247 (-)
AMCG00005532 NA other downstream 527593 2197354 ~ 2329684 (-)
AMCG00005461 eif4h other downstream 1133777 1708683 ~ 1723500 (-)
G152271 NA other downstream 1241780 1521742 ~ 1615497 (-)
G152277 NA other downstream 1349649 1505940 ~ 1507628 (-)
AMCG00005491 supt6h,LOC107603297 other upstream 8525 2872506 ~ 2890448 (-)
G152645 NA other upstream 207879 3071860 ~ 3090714 (-)
AMCG00005525 LOC106567758 other upstream 742980 3606961 ~ 3632712 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other upstream 986155 3850136 ~ 3869209 (-)
AMCG00005539 NA other upstream 1420736 4284717 ~ 4292871 (-)

Expression


Co-expression Network