AMCG00005498 (lyrm9,LOC102789908)


Basic Information

Item Value
gene id AMCG00005498
gene name lyrm9,LOC102789908
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3266374 ~ 3270844 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005498
CCAATAGTCTGGTTTTTGTCCCAATGATGCAGGGCTTAATTGACTTTTTCTGAACTAGTAAAGCTCCTGCATTTCATTCTTATTGGAGGCAAATGCATCCGCTGCGCTGgtactgtaatatatgtattgGTCAGAATTGTTGTAGAAGGTGTACTTGGTCACAATCAATAAGAAAGCAATTAAGCCATTTTTTGGGGGATATTATGGAAATAAAGGTGTGAGGCAGTTTTAACTAACACACCTGTCCATATATAAGAGCAAATGCAAGACCCATCCAGGCCACGCATTACACTAGGAACCTTAAATCCTTCTCCGTTTCTGTCAGGGCGGCTTTTAAAGTTGGACTCGGATTTTAATATTGACATTGTAATTCGGCGCGTTTTCTTTAAAGCAGGGCAGGACTCCGGCATTGAATACTTTTCATTCAGGGACGCAGCGTCATGCCGCCCCCGCTGCCCGCCGCCGAGCTGGTCCGCACGCCGCTGCGGCTCTACCGCTACCTGCTCCGCTGCTGCAGACAGCTGCCCTCCGCCGCCGCGCAGCAGCATTACCGGCACGCCGTGAGACAGGGCTTTAACTCGCACGCTGATGAAGACGACCCAGAGAGGGTCCAGCAGATCATCAGCCGAGCCATAGCGGATGCCGACTGGGTTATCGACAAAGTAGTACAAGAAAAAGTAGCCAACCGAAGAGGCAGCAAGGGCAATATGAGGGACACCATGTCTAGCTTTGAGCTTTGTCCCAAGTGCCGTGGGCATGAGAACTGCTCTTCTGGAAGAAAGGGCTGGAAACGAGGAAGAGAGTTTTGACTCATTTTCTCAGTTCGGTGCATTTTGGCTGCATCAGAACCTTAGTTTTCTCAGTGagtaattcaattaaaaggTTGCGTGTTAGATTTGGTCAGTATGTGTAAATAGCACaactaatctttttttttttcccctctggcTGTTTCATGAGCCAGAATCATGTTTTTGTAAcgatgaaatgtgcatttccttttaGGAACTTTGGaccattgtgtatttatttaacttatttccTTGTTCCAGGAATGAATGGGTCAATAATTACAACCTGTTATTTGTCCATCTTTATTGCTGCTGTGTGCAGTAAGATCCCTGGGAGCGTGGGTGCAGCAATAATGCATGACAATCAAGCACAGGCAGGAATGAAAGAATAAtgcaatctaaaaataaaacaatgaaaaagcagAATTGGCCTATA
>TU192254
AATTCGGCGCGTTTTCTTTAAAGCAGGGCAGGACTCCGGCATTGAATACTTTTCATTCAGGGACGCAGCGTCATGCCGCCCCCGCTGCCCGCCGCCGAGCTGGTCCGCACGCCGCTGCGGCTCTACCGCTACCTGCTCCGCTGCTGCAGACAGCTGCCCTCCGCCGCCGCGCAGCAGCATTACCGGCACGCCGTGAGACAGGGCTTTAACTCGCACGCTGATGAAGACGACCCAGAGAGGGTCCAGCAGATCATCAGCCGAGCCATAGCGGATGCCGACTGGGTTATCGACAAATACAAGAAAAAGTAGCCAACCGAAGAGGCAGCAAGGGCAATATGAGGGACACCATGTCTAGCTTTGAGCTTTGTCCCAAGTGCCGTGGGCATGAGAACTGCTCTTCTGGAAGAAAGGGCTGGAAACGAGGAAGAGAGTTTTGACTCATTTTCTCAGTTCGGTGCATTTTGGCTGCATCAGAACCTTAGTTTTCTCAGTGagtaattcaattaaaaggTTGCGTGTTAGATTTGGTCAGTATGTGTAAATAGCACaactaatctttttttttttcccctctggcTGTTTCATGAGCCAGAATCATGTTTTTGTAAcgatgaaatgtgcatttccttttaGGAACTTTGGaccattgtgtatttatttaacttatttccTTGTTCCAGGAATGAATGGGTCAATAATTACAACCTGTTATTTGTCCATCTTTATTGCTGCTGTGTGCAGTAAGATCCCTGGGAGCGTGGGTGCAGCAATAATGCATGACAATCAAGCACAGGCAGGAATGAAAGAATAAtgcaatctaaaaataaaacaatgaaaaagcagAATTGGC
>TU192255
AATTCGGCGCGTTTTCTTTAAAGCAGGGCAGGACTCCGGCATTGAATACTTTTCATTCTCTCACCTGTTGGACAGTACTGCTAGAGAGCCGCTGCTAAATCACATGCCAGCGGAAGTGCGTTTTCTGTGCGGAAGTGCGTTGTTTGTGTTGATGACGTCACGCCGATGACCTCAGCAGGGACGCAGCGTCATGCCGCCCCCGCTGCCCGCCGCCGAGCTGGTCCGCACGCCGCTGCGGCTCTACCGCTACCTGCTCCGCTGCTGCAGACAGCTGCCCTCCGCCGCCGCGCAGCAGCATTACCGGCACGCCGTGAGACAGGGCTTTAACTCGCACGCTGATGAAGACGACCCAGAGAGGGTCCAGCAGATCATCAGCCGAGCCATAGCGGATGCCGACTGGGTTATCGACAAATACAAGAAAAAGTAGCCAACCGAAGAGGCAGCAAGGGCAATATGAGGGACACCATGTCTAGCTTTGAGCTTTGTCCCAAGTGCCGTGGGCATGAGAACTGCTCTTCTGGAAGAAAGGGCTGGAAACGAGGAAGAGAGTTTTGACTCATTTTCTCAGTTCGGTGCATTTTGGCTGCATCAGAACCTTAGTTTTCTCAGTGagtaattcaattaaaaggTTGCGTGTTAGATTTGGTCAGTATGTGTAAATAGCACaactaatctttttttttttcccctctggcTGTTTCATGAGCCAGAATCATGTTTTTGTAAcgatgaaatgtgcatttccttttaGGAACTTTGGaccattgtgtatttatttaacttatttccTTGTTCCAGGAATGAATGGGTCAATAATTACAACCTGTTATTTGTCCATCTTTATTGCTGCTGTGTGCAGTAAGATCCCTGGGAGCGTGGGTGCAGCAATAATGCATGACAATCAAGCACAGGCAGGAATGAAAGAATAAtgcaatctaaaaataaaacaatgaaaaagcagAATTGGC

Function

symbol description
lyrm9 Orthologous to human LYRM9 (LYR motif containing 9).

NR:

description
PREDICTED: LYR motif-containing protein 9-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005498 True 1227 mRNA 0.45 4 3266374 3270844
TU192254 False 850 TUCP 0.48 4 3266742 3270839
TU192255 False 968 TUCP 0.48 4 3266742 3270839

Neighbor

gene id symbol gene type direction distance location
AMCG00005508 nlk,nlk2,LOC107682651,LOC107756449,LOC107666197 coding upstream 10268 3229689 ~ 3256106 (+)
AMCG00005507 nlk coding upstream 63614 3201501 ~ 3202760 (+)
AMCG00005506 NA coding upstream 86694 3173579 ~ 3179680 (+)
AMCG00005509 NA coding upstream 94439 3151681 ~ 3171935 (+)
AMCG00005490 sdf2,LOC106602908 coding upstream 369705 2893305 ~ 2896669 (+)
AMCG00005499 NA coding downstream 14026 3284870 ~ 3295314 (+)
AMCG00005500 NA coding downstream 34045 3304889 ~ 3306844 (+)
AMCG00005522 NA coding downstream 362889 3633733 ~ 3637811 (+)
AMCG00005526 NA coding downstream 372045 3642889 ~ 3644121 (+)
AMCG00005523 NA coding downstream 378003 3648847 ~ 3652715 (+)
G152657 NA non-coding upstream 5945 3260210 ~ 3260429 (+)
G152656 NA non-coding upstream 66187 3199332 ~ 3200187 (+)
G152655 NA non-coding upstream 79386 3183821 ~ 3186988 (+)
G152644 NA non-coding upstream 175719 3071950 ~ 3090655 (+)
G152397 NA non-coding upstream 943029 2255365 ~ 2323345 (+)
G152764 NA non-coding downstream 453069 3723913 ~ 3761827 (+)
G152866 NA non-coding downstream 988022 4258866 ~ 4260635 (+)
G152906 NA non-coding downstream 1021186 4292030 ~ 4292882 (+)
G152943 NA non-coding downstream 1261477 4532321 ~ 4534824 (+)
G153080 NA non-coding downstream 1919683 5190527 ~ 5190796 (+)
G152588 rpl23a other upstream 416766 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 755698 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 1319574 1929455 ~ 1946800 (+)
G152337 NA other upstream 1462471 1799811 ~ 1803903 (+)
G152267 NA other upstream 1517440 1745960 ~ 1748934 (+)
AMCG00005538 NA other downstream 1011673 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 1289369 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 1943969 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 3163677 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 3216874 6487718 ~ 6488782 (+)

Expression


Co-expression Network