AMCG00005499


Basic Information

Item Value
gene id AMCG00005499
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3284870 ~ 3295314 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005499
ATGCTCTGCCCGTGGAAAGCGTTTCAGAAACTCGGCAACTTCAAAAACGCATCCTATGTCGTGGActtgaacaacaacaaagcggagaaaaagaaaaacgagtACAATAATGTCAGAGAGGTTATCAGAAAGATTCAAGATGAGAAAATGCCTGAAATTATGCCGAAGACTCAACCAAAGAAGCCCCCCCAGGAACCTGTGCAGAAGCCCGTTCACTCCCGATGCCCCTTCTCTCTCAAAGTTAAAAATGTGGAGGACGGCTCCAGCCTGCGGGACACTCTGCATCAACGGGCCGCCAAGGGCGCCATCATGAACCCCAAATCACTGACCCGCGGCCCGAGGGACCAGCCCGCCGCCCCTGAAGAAGTTCTTGTGCAGGCCATCGAGTTCATCAACCAGTTTTACCAGTCTTTCAAACAGCCGAAGACAGACGAGCACCTGGCCCGGGTGGAGGCGGTGGCCCTGGAGATTGAGAAGACTGGGACCTACCAGCTGACGTCGGAGGAGCTCGTGTTTGCAGCGAAGCAGGCGTGGCGCAACGCCCCCAGGTGTATCGGCAGAATCCAGTGGTCAAATCTGCAGGTGTTTGACGCTCGTAAGTGCTCCACTGCCAAGGAGATGTTTGAGTTCCTGTGCAATCACCTCAAGTATGCCACCAACGGGGGAAACCTGAGgtCAGCGATCACAATCTTCCCCCAGAGGACCGATGGGAAGCATGACTTCCGCGTGTGGAACGGCCAACTGGTGAAGTATGCCGGATACCAGATGCCCGACGGTACCATCCAGGGAGACCCCTCCAGTGTGCAGTTCACAGAGCTCTGTATCCAGCTGGGATGGAAGCCCAGATACGGCCGTTTCGATGTGCTGCCCCTGATCCTCCAGGCCAATGGAGAGGACCCTGAAGTCTTTGAGATCCCTCCTGAGCTCATTCTGGAAGTCCCAATGGAGCACCCCCAGTATGAGTGGTTCAAAGAGCTAGACCTCAAATGGTATGCCTTGCCAGCTGTCTCAGGCATGCTTCTTGAAGTGGGAGGCATAGAGTTCACCGCATGCCCCTTCAATGGTTGGTACATGGGCACAGAGATTGGCGTGAGGGACTTCTGCGATGCTCAGCGCTACAACATCCTGgagGATGTGGGGAGGAGGATGGGTCTGGAGACACAAAAGCTCTCCTCCCTGTGGAAGGACCAGGCGCTGGTGGCCATCAACATCGCTGTCATCCACAGCTTCCAGAAACGCAACGTCACCATCATGGACCACCACTCGGCTGCTGAGTCCTTCATGAAGCACATGCACAATGAGTTCCGGCTGCGGGGGGGCTGCCCTGCCGATTGGGTGTGGCTGGTGCCGCCCATGTCCGGCAGCCTCACCCCTGTCTTCCACCAGGAGATGGTCAGCTACATCCTCACCCCCTTCTACTATTACCAGCCAGATCCCTGGGTGACCCATGTCTGGCAGGACGAGCAGAAAAGACCAAAGAAGAGGCAGATCCGCTTCAAGGACCTGGCGAGAGCTGTGTTCTTTGCCTCCTCTCTGATACGTAAAGTCATGGCCAGCAGGGTGAAAGCCACTGTCCTGTATGCCACAGAGACGGGCAAATCGGAGACTTTTGCCAAGAAGCTCAACTCCATGCTGAACTGTGCCTTCAACTCCAGGGTGCTTTGCATGGAGGACTATGATTTCAGCGACCTGGAGAAGGAGACGTTCCTAGTGGTGGTCAGCAGCACGTTTGGCAATGGCGATTCCCCGGGGAATGGAGAGGTGATGGACGGGAAGCTGACGGAGCTGGGGGCGCACAGGGTGACCCTCACCGGGGAAGGAGATGAGCTGAGTGGCCAGGAAGAGGCCTTCACCACCTGGGCCAACGGCGCATTTAAGgaCGCTTGTGAGACATTTGAGATCCGTGGCCAGCTTAACATCCAGCTCCCCGGGGCCGGGCAGCTGAGCCACACGTGGGACCCTGAGAGGTACCGGCTGGCACAGGAGAGCCAGACTCTGGACAACATCACAGcgcTTTCTACTCTCCACTCCAAAGATGTGTTTgcaatgaaactgaaaaagagACAGAATCTGCAGAGTCCTCACTCGAGCCGCTCCACAATCCTGGTGGAACTGATCAGCACAGGGGACAAAGAGCTGCAGTATCTCCCCGGGGAGCACGTGGGGGTGTTCCCAGGAAACAGCGCCCAATTGGTCAGCAACATCATAAAACGAGTCCATGATGCACCGCCGTCCAATCAGAGCCTGCGTCTGGAGGTGCGTCCTGACGGCAGCCATGCGGGTGTGAAAAACTGGCAGACAGACAGCCGGGTCCCAGTATGCACTCTGTCTCAAGCCCTCGCTTACTTCCTGGATATCACCACACCACCCTCGCAGAGCCTCCTCCGCAAGCTGGCCCAGCTGGCCGGGGATCAGCAGCACCAGAATCGCCTGCTTGCTCTGGCCCAGAACTTGGAGGAGTACAAGACCTGGAAGACGTTCAACAGCCCCACCTTCCTGGAAGTACTGGAGGAGTTCTCCTCCCTGGAGCTCCCAGCCACCTTCCTCCTGAGCCAGCTGCCCCCCCTCAAGCCCAGATTCTACTCCGTCAGCTCGTCTCTGGACCGCCACCCTGGGGAGATCCACCTCACTGTGGCGGTTGTTAACTACCACACACAAGATGGTAAGGGTCCTCTACACCATGGCGTTTGCAGCACCTGGCTCAACACTATCAAGGAGGGAGACACGGTGCCCTGCTTCATCCGCAGAGCCAATGGCTTCCACCTCCCAGAGGACGCCAGCTCTCCCACTATCTTGGTGGGACCCGGCACGGGCATCGCTCCTTTCCGTGGATTCTGGCAACAGCGGCTCCATGCCCTGGAGACAAAAGgggtcAGAGGGGTACCGATGAGACTGGTGTTTGGTTGCCGGCAGTCGGACACAGATCACCTGTACCGGGATGAGATGCTGCAGATGCAGAGACGGGGCATCCTGAAGGAAGTCCTCACTGCCTACTCCCGCCAGCCTGGCCAGCCCAAGGTGTACGTGCAGGACATCCTGAGGGACAAGCTCTCAGAGGAGTTGTTTAGCGTCTTGCATCAGCGCCAGGGACACATTTACATCTGCGGGGATGTCAGGATGGCGCGGGACGTAGCGGAGACGCTCAAAGAGATCTTTGCTCACAAGCTGGGTATGAGTCTGGCTCAGGCTGGGGACTACCTCACGCAGCTCAAGACTGAGAAAAGGTATCATGAAGACATCTTTGGAGCAGTCTTCCACAAATGAAGAGATGTCAACCAAGGCAGGGTCAGTGCAGGGAGTGAAGACCCTCATTGGCTGGGATACTGTGAAAGACAATCAGTTTTTTGGTGGATTTATAGAAGTGAACCTATGCAGTATGCAAACCAAGTGCattcttttttaatgaaggaTTTTACAAATTGGTGTAAATTTTGAAACACTTTCTGTAAGGGACATATCAACTTTTAGGTTATCTTTCTGCATTCTTGATAGTCTACAAGAAAGATATATGTTCTATATTCCTTGATTTATGTctcaaaaatgtattcactcTAATTGAGTCGATATTTGCAGCAAAACAATCCTGCCTGGAAAGCACATCATTTTATATTAGGTGTAAACAAACAACATGTTCTTGGGAATCAAACAACAGCagaatatatttcagtatattgCGTGTATTTATAGAATGATACGCAAGCAATCAGTGGAATCTCTTCCCTATTCATCTGACGTTAAATGATTGTGTGATTTCTGGTGGGTTTTTAAGCCTGCAAGtaatgtatgtgtctgtggCACTCATTTGGCACTCTGTCAGGTGGAGGagataaagaaatgtataattagaAAATAGGCAACAAAAAAAGCTTGTAAACTGACTATATAATAACTATGGAAAAAATGCTTTGTATATACTAATGGTTAAAtgcatagtatttattttaataaagtctATTatcaatttgattatttttatcatcCCTAATGCAACTGTCATATTTACAGTGAGTGCTGTGGGTGAAACTGACAAGTATAAGTAAGGTTTTTTTCTTGAGGTAGTGCTTCTTGGGCTCTTGTTAATTACGTGTATAAGAAACCAGGGCTCTTCCAGGAGAAAATCATgtcaatctttatttattttattttaatgaagcatTTAGATGGTAATATATTCTGAAGTATAAACTGTAGAAATCAAATACAAGTGGAATGCTGTAGTGCAATGGAGATTCAGGGTAACAATATTAGGGAGACTATATTCTCTATGGCAAGAATGTCTATACAGCGAATAGGTTTACTGTTGTTTGCTAATGAAATCAAAGTATATTAAAACTCAATTGATTTTGACATTAATGGAGTGTGTGTGGTACTGCCACATTggtactgaatatatatttattttgtatatatgtgtggaATTACCCTTATTAATgcaattacattaaatcataatttccCTTA

Function

GO:

id name namespace
GO:0018119 peptidyl-cysteine S-nitrosylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006809 nitric oxide biosynthetic process biological_process
GO:0005506 iron ion binding molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0004517 nitric-oxide synthase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function
GO:0010181 FMN binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K13241 NOS2; nitric-oxide synthase, inducible

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005499 True 4461 mRNA 0.50 25 3284870 3295314

Neighbor

gene id symbol gene type direction distance location
AMCG00005508 nlk,nlk2,LOC107682651,LOC107756449,LOC107666197 coding upstream 28764 3229689 ~ 3256106 (+)
AMCG00005507 nlk coding upstream 82110 3201501 ~ 3202760 (+)
AMCG00005506 NA coding upstream 105190 3173579 ~ 3179680 (+)
AMCG00005509 NA coding upstream 112935 3151681 ~ 3171935 (+)
AMCG00005490 sdf2,LOC106602908 coding upstream 388201 2893305 ~ 2896669 (+)
AMCG00005500 NA coding downstream 9575 3304889 ~ 3306844 (+)
AMCG00005522 NA coding downstream 338419 3633733 ~ 3637811 (+)
AMCG00005526 NA coding downstream 347575 3642889 ~ 3644121 (+)
AMCG00005523 NA coding downstream 353533 3648847 ~ 3652715 (+)
AMCG00005551 wsb1,LOC107756317,LOC107746651,LOC107682796,LOC107592922,LOC107587373,LOC107672108 coding downstream 411339 3706653 ~ 3722896 (+)
G152657 NA non-coding upstream 24441 3260210 ~ 3260429 (+)
G152656 NA non-coding upstream 84683 3199332 ~ 3200187 (+)
G152655 NA non-coding upstream 97882 3183821 ~ 3186988 (+)
G152644 NA non-coding upstream 194215 3071950 ~ 3090655 (+)
G152397 NA non-coding upstream 961525 2255365 ~ 2323345 (+)
G152764 NA non-coding downstream 428599 3723913 ~ 3761827 (+)
G152866 NA non-coding downstream 963552 4258866 ~ 4260635 (+)
G152906 NA non-coding downstream 996716 4292030 ~ 4292882 (+)
G152943 NA non-coding downstream 1237007 4532321 ~ 4534824 (+)
G153080 NA non-coding downstream 1895213 5190527 ~ 5190796 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 14026 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 435262 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 774194 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 1338070 1929455 ~ 1946800 (+)
G152337 NA other upstream 1480967 1799811 ~ 1803903 (+)
AMCG00005538 NA other downstream 987203 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 1264899 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 1919499 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 3139207 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 3192404 6487718 ~ 6488782 (+)

Expression


Co-expression Network