AMCG00005500


Basic Information

Item Value
gene id AMCG00005500
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3304889 ~ 3306844 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005500
ATGCGATCTGGTGTTGTCAAACAAGCCAACAAGCCCCTCTGGTATGATGTCTATGCTGCCTTCCCCCCCAAGAGGGAACCCCTGTATGAGAAACCCACGCAGAGGTTTGGAAAGGTGGTAGACCCAGTGCCTGACATCTTCTACTCTGAGGACAGCATTAGAGCcAAATTCTTTGAAGTCTTTGGGAATGGACCCAAAGCATTTGATCTGGCCAAATCCAGTTCTGTCTCCTCTAGTCAATGgtttgtggagaagtacagagaGCTGGAGAGGCAGGGGGAGCTGGATGAGGAAGCTCTGTTCGAGGAGACGGCTAAGCATCTCCTCTCTGAAGGAATCATGCTGAGGAGAAGAGTTGGCTACACGGCCCACAGCGCCATGCCCGAGAGCAGGGACCCCGTGCTGGAGATGAAGCTGAAGGACATGCTGGCAGAGCTGCAGCAGGAGGCCAATCCCGGCGACAAGCAGATGGAGACTCCTCAGGTACCGGAGCAGCACCCTGGAGCACCACAGACACCCCACTGA

Function

GO: NA

KEGG:

id description
K17402 MRPS23; small subunit ribosomal protein S23

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005500 True 525 mRNA 0.55 4 3304889 3306844

Neighbor

gene id symbol gene type direction distance location
AMCG00005499 NA coding upstream 9575 3284870 ~ 3295314 (+)
AMCG00005508 nlk,nlk2,LOC107682651,LOC107756449,LOC107666197 coding upstream 48783 3229689 ~ 3256106 (+)
AMCG00005507 nlk coding upstream 102129 3201501 ~ 3202760 (+)
AMCG00005506 NA coding upstream 125209 3173579 ~ 3179680 (+)
AMCG00005509 NA coding upstream 132954 3151681 ~ 3171935 (+)
AMCG00005522 NA coding downstream 326889 3633733 ~ 3637811 (+)
AMCG00005526 NA coding downstream 336045 3642889 ~ 3644121 (+)
AMCG00005523 NA coding downstream 342003 3648847 ~ 3652715 (+)
AMCG00005551 wsb1,LOC107756317,LOC107746651,LOC107682796,LOC107592922,LOC107587373,LOC107672108 coding downstream 399809 3706653 ~ 3722896 (+)
AMCG00005550 NA coding downstream 432564 3739408 ~ 3740831 (+)
G152657 NA non-coding upstream 44460 3260210 ~ 3260429 (+)
G152656 NA non-coding upstream 104702 3199332 ~ 3200187 (+)
G152655 NA non-coding upstream 117901 3183821 ~ 3186988 (+)
G152644 NA non-coding upstream 214234 3071950 ~ 3090655 (+)
G152397 NA non-coding upstream 981544 2255365 ~ 2323345 (+)
G152764 NA non-coding downstream 417069 3723913 ~ 3761827 (+)
G152866 NA non-coding downstream 952022 4258866 ~ 4260635 (+)
G152906 NA non-coding downstream 985186 4292030 ~ 4292882 (+)
G152943 NA non-coding downstream 1225477 4532321 ~ 4534824 (+)
G153080 NA non-coding downstream 1883683 5190527 ~ 5190796 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 34045 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 455281 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 794213 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 1358089 1929455 ~ 1946800 (+)
G152337 NA other upstream 1500986 1799811 ~ 1803903 (+)
AMCG00005538 NA other downstream 975673 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 1253369 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 1907969 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 3127677 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 3180874 6487718 ~ 6488782 (+)

Expression


Co-expression Network