AMCG00005502 (synrg,LOC107727910)


Basic Information

Item Value
gene id AMCG00005502
gene name synrg,LOC107727910
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2583399 ~ 2638908 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005502
CCCGGGCTGCCCATGCTGACCGAGGGAAGATGGACGCCTATGACTTGTTCCGCAGGCTGGGATCCGGAGCCAAGTTTGATTTCAAGAAATTCGGCAAAGATGCGGAGAGGTTTAAGGTGGTGAAGTCCCAGAGACCTGAAGAGAAAGCCTCCTCTGATATCCTGGCCAGCATTGACTTCTTCGGCACGGGGGGCCTTGTCTCTCAGAGCAATGGACGGGGCAAGGTTGGCACAGCGCCCCCCAAAGGCACAGCAACTttgggagaggaagaggaggaggaggaggaggagaggagttCAGACTTGGAACAGGAGATCGAAAGTCATCCACCAGctgggaagaggaagagaactGCTGACAAAccagtgaagaagaagaagaagacaacGAAAAACCAAAGTGCAGATACTGAAGACGCCACTGAGAAGTCCGAGGGTGCCGACAGTGAGGGCATTCAGTGGATGTCTGCGCTGGACAAGAAAGCCAAAGGGTCTTTGGACAAGAGTAAGGACAAGACCTGGAAGAGACTGAAGCATCTGCAGCAGGAGAAGGTCAATAAAATCCGGCACCAGAACAGGATAAACGTCCACGGATCTGACGTCCCCGACCCCATGACCACCTTCGAGCAGATCCAGGAGGAGTACGGCATCGACCCGCGCATCATCCAGAACATCCGCCAGGCCGGCTTCGaagcccccacccccatccaGATGCAGGCCATCCCACTCATGCTGCATAACCGGGAGATCCTGGCGTGTGCGCCCACTGGCTCGGGGAAGACGGTGGCATTCTGCCTGCCCATCCTCGCCGCGCTGCGCAAGCCTGTCAACAAGGGCTTCAGAGCTCTGGTCATCGCACCCACCCGAGAGCTGGCCAGCCAGaCTCATCGGGAGCTGGTGCGGCTGTCCGAGGGCCTGGGCTTCAGGGTGCACATGATCGACAAAGGGGCGGAAGCAGCCAAAAAATTCGGGCccaaatctgccaagaaatacgATATCTTGGTGACGACTCCCAACAGATTAATTTACCTGCTGAATCAAGACCCCCCCTCAGTGGACCTCAGCAGGGTGGAGTGGCTGGTGGTGGACGAGTCGGACAAGCTGTTCGAGGACGGAAAGAGCGGCTTCCGGGAGCAGCTGGCCACTGTGTTCCTGGCCTGCTCCTGCCCGCGTGTGCGCCGGGCCCTGTTCAGCGCCACCTGCGCTCCCGACGTGGAGCAGTGGTGCCGGCTCAACCTGGACAGCCTGGTCTCCGTCAACATCGGGCAGAGGAACTCCGCTGCCGACACAGTGGAGCAGGAGCTGCTGTTCGTGGGCACTGAGAGCGGGAAGCTGGTGGCGATGAGGGACCTGATCAAGAAGGGTTTCCTCCCCCCGGTGCTGGTGTTCGTGCAGTCGATCGAGCGTGCCCGGGAGCTGTTCCACGAGCTGGTCTACGAAGGGATCAACGTTGACGTCATCCATGCGGAGCGCACTCAGCTGCAGAGAGACAACGTGGTGAGCAGCTTCCGCTCCGGGAAGATCTGGGTCCTgatctgcactgcactgctggCCAGAGGCATCGACTTCAAGGGCGTCAATCTGGTGATCAATTACGACTTCCCCACCAGCTCTGTGGAGTACATCCATCGCATTGGTCGCACCGGCAGAGCAGGGCATCGTGGGAAAGCCATTACTTTATTCACAGAGGATGACAAGCCCTTGTTACGCAGTATCGCCAACGTCATCAAACAGGCTGGCTGCCCGGTCCCTGAATATATGATTGGATTCAAGAAAATACACAGCCAAGAGAGAAGGAAGATGATGAAGAAGCCCCCCAGAAGAGCCACCATCAGGACCACCCCCCGCTTCCTGCTGAAGAAAGGTCACGGCAAGGGTAAAAGCTTCATGTATCCAGTCGGAGGGGGACTCGGGCCTCCACAAGGGATGATGCCAATGCAACctcaacaacagcaacagggcTTCCCTATGGTGCAAGTCATGCAGCCCAACATGCAGGGCATGATGGGAATGAACTTTGGTGGCCAGTTGCCACCTGGCGCCATGCCGATGCAGGGTGGCATGTCAATGGGAGCCATGCAGGCCCCTGGGATGCAGTTCATGGGCCAGCCGCAGTACATGGGCATGAGAGGACCGGGCCCGCAGAAGCGtctggagcagcagcagaggATGCTGGAGGAGGACAGGAAGCGGCGGCAGTTCGAGGAGCAGAAACAGAAGCTGCGTCTGCTCAGCAGTGTCAAGCCCAAGATGGGTGAGAAGAGCAGGGATGATGCTCTGGAGGCCATCAAAGGGAACCTGGACGGCTTCAGTAGGGACGCTAAGATGCACCCCACCCCCGCCTCGCACCCCAAAAAGCCAGACTCATCGCCATCACACTCTTCtgtctcctccctctccttcccccctGCCTTCCGCGAGGACGATGACGAATTTAGCGACTTTATGCAAGGTCCCGCTGAGCCCCCTgcctccttcccctcctccacccccacctCTTTCCCAGCTGTCCATCGCGCTCCCCCCCAGCTTCAGGCGGGACGGGTGCACCCCCCCTCAGAGCAGCCTCACCCCCCTGTGCCCCCCCAGTCTGTCCTCTGCATTGTGCCAATCCCTTCAGCCACCCAGCAGCCCACTGTCACTGCCTCCAGCTCCCAATCTACTGCCTTCAAAGGCCCATCACTGGAAGAGAAACTTTTTTCCTCCTGCGATTTAACCTCAGACAGCCGGGCCCAGCATAGTTTTAAGTCCCGGCAGCCCTTGGCAGAGATGGCACCTAGGTCTCGGGTGTTGGCCCAGTTTCAGCCCAGCACCAGAGCCCGAAACTGGGGCTTCCCCAACAGCAGCCTGAGCGGGGCCTTCAGCGTTGAAACGCCAGGCCAGTCCTCGCAACCTCCACCAACGCAGGCCCCTAACAGCGCCCCGCCGGCCGCTCAGGACAGCGGTGTTGGGGTGTATCCTCAACAAGAGCATATCCAGCCCATGATGCCTGCATGGCTCTACAACGACAGCCTCGTTCCAGACCTTTTCAAGAAAGTCCTGGAGATCACCATGACTCCCTCAGGCATCGACACGGCCAAGCTCTACCCCATCCTGATGTCATCGGGGCTGCCCAGGGAGGCGCTCGGCCAAATCTGGGCCCTGGCCAACCGCACGACCCCCGGGAAGCTGACCAAGGAAGAACTATACACCGTGCTGTCTATGATTGGCGTGACTCAGagcGGTCTCCCAGCAATGAACATAGATGTGCTGAGCCAGTTCCCCTCCCCCCCTGTGCCCAACCTGCCTGGCCTGGCCATGGCGATGCCCTCGGTCCTGCCCCATCAGCCCATGATGTCGGTGCCCTCAGTCCCCCAGCCCCCTGTCTCCATGGCCATGACTTCTGTCCCACCAGTGCTGGGCATGACCACCCAGGGCTCCAGCACACAGCCGCCCACTGGGTTCATGCCAACCTTCCCTCCTACCACACAGGCGCAGAAACCCGACGATGATGACTTCCAGGATTTCCAGGAAGCGCCCAAGGCGGGGTCGGCGCAGGACTCCTTCACCGACTTCCAGGGGGAGTCAGCTGGGGGGTTCCCCGGCACGCCCAGCTCCCAGCCCCCGAGCAACGCCCCGGCCTTGTTGACTCCTGTGTCTGGAATGGCGTCGTCTTCGGCCTCTGATAAGTACGCAGTGTTCAAGCAGCTCTCGCCCTCTGATTTAAAACCCATAGgGGAAGGATTTGCAGATTTCAAGTCCACCAGTGCCGACGATGGCTTCACAGACTTTAAGACGGCCGACAGCGTTTCCCCATTAGACTCCTCAGACCCAGCCAAAATATTCCAGCCTGCTTTCCCATCTCCTTTCCTGCCATCACAGCCtctacaacagcaacagcaactgcAACCACAGCCCAAACCACAACCCCAGCAATACCACACCGCCCCTCCCTCTCAGCCTAAAAACCCCCTCAACATGGCCGACCTCAATCTGTTTTCTTCTCTGGCTCCAGCCGCCCCCATCTCCGACACCAAACTTCCGCCTTTCCCCTCGGCCCCCAGCTCTCTAATAGCCCCCCCGACGGGACAGAAGATCCTGGCTGGAGTGGCGGAAGATTTTGGGGACTTTGCCTTGTTCGGGACCTCCACCACCTCCGCCCCCACTCCTGCCGCTGTCACTTCTGTGGCCCCGGTGTCTGTGGCTGCAGGTAGTGCTGGGGTGCTGGGCTTGGTGCAGGATGACTTTGCAGACTTCATGGCCTTCGGAGGCTCGGGGGAGCCCAAGCCCGAGCCCAAGGACCGAGAGGGGAACGCGGCCGGGGGTGTCCTCGCGGAGATCCCGCCCCCCCCGCAGCTGCAGCAGCCGCCCCGACATGCCCAGCCGCCCTGCGACAAGTACGATGTTTTCAAGCAGCTGTCTCTGGAAGGCTCTCTCGGGTTCGAGGACACCAAGGAGAGCGGGGTGGCAGCCTTGGGGGGGTCCTACGCGTCCCTCAAGGGCGACGCGGATGACTTTGCCGACTTCCAGTCCTCCAGGTTCTCCACGGCTCTGGGGGCCTCCGAGAGGAGCCTGGTGGACAAGTTGGCCGCCTTCAAGCAGGCCAAGGAGGACTCGGCCTCGGTCAAGTCCCTAGACCTGCCCTCCATCGGGGGCAGCAGCGTGGGCAAGGACGATTCGGAGGACGCCCTGTCCGTGCAGCTGGACATGAAGCTGTCCGACGTCGGGGGGGACCTGAAGCACGTGATGTCGGACAGCTCCCTCGACCTGCCCGGCCTCCCCGGCCACCACCCCCCCGCCGCAGAGGGGGATGACTTGAAATTTGACCCCTTCGGCACCTTCAGCGGCGGGTCGGCCGTCAGCAGCCTGGCCAGCTACGATTGGTCCGACCTGGAGGAGTTCTCGGCCGCTCAGGGTAAGAAGCCGCAGGCGGGCGTGCTGGGTTTGGAGGTGGGCAGCCGGCCCTCCTCGTCCACGCTGCAGAAGAAGGAGACTTCCTTCGGCAGCTCTGAGAACATCACCCTGACCACCGTGGCCAAGGTGACCACTTTCCACCCGGAGGAGGCCTCCTCTGTTGAGAACCTCGCCGGCTCCAGTGACCAAGCCGCCGAAGAGGACGATTTTGGGGACTTTGCCAGCACCATATCGGAGAAGTCCGACTCGCCGCCCACCACGGCAGACCCCGGCTCCGATAGCCTGCCTGGTGAAGCTGCAGATGACTTCGGGGCCTTCCAGGGGGACAAGCCCAAGTTCGGCAAGTTTGATTTCCTCAAAGCCAGCTCCCAGGCCAAGGTGAAGTCCAGCGAGGAGATGATCAAAAGCGAACTGGCCACCTTTGACTTGTCTGTGCAAGGCTCCCACAAGAGGAGCCACAGCCTTGGTGACAAGGAGATCGGGCGCTCCACCCCCTCTCCTGCCCCCGAGCTTCCCTTCCGTGATCGCTCCAACACGCTGAGTGAGCAGCCCGCCCTGCCCGTCATCAGGGACAAATACAAGGACCTGACCGGGGAGGTGGAGGAAAGCGAACGCTATGCTTACGAGTGGCAGCGATGTCTGGAGAGCGCACTGCAGGTCATCAATAAGGCCAACAATACCCTGAACGGGATCAGCAGCTCTGCCGTCTGCACCGAGGTCATCCAGTCTGCCCAGGGCATGGAGTACCTGCTGGGGGTGGTGGAGGTGTACAGGGTGACCCGGCGGGTGGAGCTGGGGATCAAGGCCACGGCCGTGTGCTCAGAGaaactgcagcagctcctcaaGGACATCACCCGCGTCTGGAACAACCTGATGGGCTTCATGTCCCTCGCCAACCTATCGCCAGACGAGAGCTCCCTGGATTTCTCATCCTGTATCCTGAGGCACGGCATCAAGAACGCCAAGGAGCTGGCCTGTGGGGTGTGCCTGCTCAACGTGGACTCCAGGAGCAAGGCTTTCAACTCGGAAACGGACAACTTCAAACTGATGTACGGAGGCCACCAGTACCACGCCAGCTGTGCTAACTTCTGGATCAACTGTGTGGAGCCCAAACCCCCGGGCCTTATTCTGCCTGACCTGCTCTGAGGTGCCCCTGCCATGGCATCCGACGGAGGGTAAACAGGATGCAAGCTGGCTGGTCTAGACCTGCTGAGAGACTCGCTGAAAGCATGTTAATACGAGCGCCCTGTCATTCACCCAGAATAGCTGCTCTTTCATTTACCTCCCAGAGCTTTTATCACCGGACTAATTACACCATTCTGTGGGAGTCCGCGAGCCATTAGCATGGGCTGAGCAGTTGGAAAGAAATggttatgtgtatattttttgttctttttctttcttcgctggcattttaaaagcacaagcTTCCGTGTCGGATATCGAGGGATATTTATTCGAAATTAATGTCTTTGTTTATAGCGGTGTTAAGGTGTTCAGCCGTGTGTTGGGAATTCATCCTCTAGGTGGGATGGGAAGGGTAACAATCATGGGTCCACTGAATATCAACAAAGCTGTCCAATTTGTTCATTTAAGATCAAGGTTTCTCATGACGTGTATCcccaataataatataataaagccGAGTTGTGGAGTTCGCCCCTTAGAGTATACCGTGTTTTCCCTCCAAACGAATGTGCTCTTCAGGATCTGATGTTGGCTGCAGTGTATCTCTGAACCTCCTGGGAGTTACAGTGAAGAGGGAGAAATAACTTGATTAGAGCGAAATCAATGCACGgttaaagaaaatgttactGATGCACTTGGGTCTTAAGGTTTAAACTTAGAGGGACTTGTTACAGAAAGATCAGATGcttcaaaagtttattttttctccagcttttatttcttttttaagtttgcttCGCTGTGTTGGGGAGTAGCTCGCTACAGGTGGCAACGCTACTGATGCTAAACGCTAGTAATCAGCTATTATCTTGATGagcacaatgttattttagataTAAATGTGAACATTGCTGAGAGAGGTCTTCTCTTTGCTTTTCACTAAATGAATCAGTCAGGCCAATCTATTATCCAGACTTTATgatcttaaaacacaaaaaaacatattgtaaaagCCATATAAGCAatttactatatttaattttgcaggTTTTGTGTTAAACTAGAGGtgcacaaaaagcagaacactgATTGGGTTATCCATCACCGAGCAAATAACCCGACCTCATGATGGGCAACTCAAtcagcaaatattttaaatgttttggaaggTAGGTACCAGATGCTGCCCAGCTCTGGTGCAGAAGTCGTCAATgcaaaaaattaaattcaaacatATCTTTTCAATAAACTAAGAGAACAATGTTTTCATCTAGTTCAACACAAGTTGGCCTGCCAGCACAGCCTGCAAACTTGCTCTCAGATTCACACTTTGAAATGTTATGTCGTCTCTCTGCAGATGAAGCTGTGAGACAAGGAAGTACACAATTGCATTTGAGGTGTCTTTAACATTTCACCACTTCTGTCACCAAGTTTTGTCAGAGTCTTCGGGTATGGGGTATTACAAAGTCAGAACCCTGCAAATGCACGTcaacatt

Function

symbol description
synrg Predicted to be part of clathrin coat of trans-Golgi network vesicle. Orthologous to human SYNRG (synergin gamma).

NR:

description
PREDICTED: synergin gamma isoform X2

GO: NA

KEGG:

id description
K25219 SYNRG; synergin gamma

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005502 True 7516 mRNA 0.57 35 2583399 2638908

Neighbor

gene id symbol gene type direction distance location
AMCG00005503 NA coding upstream 13689 2566389 ~ 2569710 (+)
AMCG00005504 hnf1b coding upstream 17899 2546393 ~ 2565500 (+)
AMCG00005484 NA coding upstream 62445 2512222 ~ 2520954 (+)
AMCG00005483 LOC108431323,LOC108278759,LOC100705065,LOC107714048 coding upstream 81672 2495360 ~ 2501727 (+)
AMCG00005482 NA coding upstream 89162 2487213 ~ 2494237 (+)
AMCG00005493 NA coding downstream 195589 2834497 ~ 2844701 (+)
AMCG00005494 rab34,LOC108443499,LOC102306323,LOC102777300,LOC108278203 coding downstream 211184 2850092 ~ 2857112 (+)
AMCG00005492 NA coding downstream 228063 2866971 ~ 2871873 (+)
AMCG00005490 sdf2,LOC106602908 coding downstream 254397 2893305 ~ 2896669 (+)
AMCG00005509 NA coding downstream 512773 3151681 ~ 3171935 (+)
G152397 NA non-coding upstream 260054 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 1121460 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 1124652 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1329440 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1526004 1057185 ~ 1057395 (+)
G152644 NA non-coding downstream 433042 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 544913 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 560424 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 621302 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 1085005 3723913 ~ 3761827 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 72723 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 636599 1929455 ~ 1946800 (+)
G152337 NA other upstream 779496 1799811 ~ 1803903 (+)
G152267 NA other upstream 834465 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 1065819 1509502 ~ 1517580 (+)
G152588 rpl23a other downstream 206309 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 627466 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1643609 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 1921305 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 2575905 5214813 ~ 5241776 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_02645463_02689522 SYNRG coding CI01000053 null 2645463 ~ 2689522 (+)