AMCG00005503


Basic Information

Item Value
gene id AMCG00005503
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2566389 ~ 2569710 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005503
ATGGGACGGCAGGTGGGCTTCCCAGCATTCCGCAGTGTTTACCTGCCCGTGAAGGGGCTCGTTCTCATCTGCGCGCTGCACCTTATCAGGATTGTCCTCTACAAGCCTGGTAATGCCCCCCGCTCCTCCTCCCCCGAACACCCGACTTCCTCCGTGCCCAGCAACCGGAGCACGCTTTCCACAACATCACCTTGGTAACTGTGGCAACCCTTAACGAGTGGAGCTGGCGGATTGGCTGATGACAGTCGCTCAACAAATTGCCGTTACACAAGAAAGGACAGCAACCAAactcccaaacacacacacacaaacaaaaactatttttaattcttaaaaaacaagctaaataaataaatggacacCTATAGGCAATAGAGATCAACAAACTGGAGAAGCCTGCATTTCCTACACAGTATTTCTATTTTGTTGTGTCTTTGTGCGGTGCGTAGCTGAAGTTTTGGAGATATCTGGTCTGGGACAGCGAAGCATGCCGACACAAATTTCTCCTCATCAAGTGGAAGACGAGGAAAAACAATCTCTACAATCTCTACATCTCTGATGACAGTTCCAGCTGTCTTTCCTCCGTCTGAGATCGGGTTCTGCGTCTCTGACTCCCACACCCGGCCCGGGTCACCTCCTTGGTTGCCGGGCCTCTGCAGTTGTGtccagaaaaaaaagatcagtGCGAGGACATGGCATCGCTTGGAGACTTAAAGACGTACgcgaaatgagagagagagcattggGCGGGGCAGGAGTGGCTGTGGTGAATAATAAGGACAAATCGGTCAAAGAGGAAACTGCACTGCTGTCTAGGTGGGTCTGCTCCCAAAGCCCACGGCTAAGCTTTTTGGCGATACTGGCCTGACTCGGAGAAGGTGCCAGAACAGCAGCAAACTCACTGACTGCATTAAGGGGAAGAGGGGAAAATTTACAGATGGACAAGCTCCCACTCTGATGCCTGGACTTCAGCCTGAAAGCCCCTTTGCTAGAGTTGTGCAAAGCTGGAGCATCTCTACACTGGTCTGTGGAGacttaacacacacacctctgaaGGGACAAGAGAGTCAACCCACTGCCGGTGGGACAAGTGACGGATGATCATGACAGCAATGATGATGATACAAAGAAGAATAAAGAGACTTTATTGAATGACAATCAACCCATGTTTCAGCCCCTGCCCCCTCCTTACCTCCCTACCTACCTCTCCGCTCCCCCACCGCCCCAGCTCCCAGCCTGAGGTGCGAACTGCAGCAGATCCAAGTGTTCGTCCATTGGTTTCATTCTGATGCATCTGCTTTGTTGTAAAGAGTCTTccatatatgtgtttttaaaagaaaaaagaaaagagaggatGACAAAAAAAGGCATTAGGTTATTTGGCCTGTTTGAGCTCTCCTGGTTTGAAGTGTGTAACACCCTGGTATTTCTGAAGCACTGCTGTCTCTGTTTGTAATGGAGTAAACAGGGGCTTATCTGTTTATTCCCTGTGTGGCATTTTCAGTGAATTTAGAGGTGTCCAACAGGGAGATGATACTGCTCAGGCTTAGGCACCCCCACATCAGAGAGGGAAAAGCAAAGGGAATGTAAATCctcataatatataatatatttttctatagcTGAGTTTAAACAACAGCACCTTTGTATCTCATATCACCCCCTAATGCTGATTTGAATTGATGGTATTTTTTTgatcataaaaaaacactttcacttCACTTTCTGGTTTGTCCAGAACTCAGAGGAGCATTTAACAACTGAGGATTAAAACCTTTTGAAGGGGTTTCTCAGTTCCCTTTACACATTCCCCTTGGGACTTATTCTCTGACCCCTCACTAGTTGAATAGTTTTTAtcgtatatttatatatattggaCCAAACTGGtgtacagcagtgtttttttcaattcaattgaaATTTCGCCAGGAGGTTGAGAGCTGTCCTGTAACTGGACGAGACATCTTTGTGACAAACAGTGTTACTTATATACAACCCTGAGCTGACCAGGGGTGACGTGTAAAGTGCTCACTGGATAcaatcaaataatgtaatgctttttttatgaGGCAGTATTAATTCACCTGTTGTTGGCTGATTTTGTTCCAGTGCATAACGTTCCAAAGAGCTTGTAAATACAATGGGAAAGAATGGTTCTGATGCATTTGAAATTGAGATCCTTTCTAGATGACCTGTAGTtaaacactacagtgccctgactttatatataaatacatatattctgtTGTACAAAAGCCACTATTGAAAAGGTCATAGctacatattttgtaatgttttatgtacaaaGACACACCCACTGCCAAGAACACAGAGGGGATTTCAGTTTATACCTAGAGGACGAAAACGCAAAACACCAGAAATGATTTtcttttgatgtattatttttgtataaaaaaaatggaaatcaatcttttaaaatcatatttatacttttgttGTAAAGTGGATATTTcaagtaaacttttttttcgGAAAACGAAAGATTTTCTgtctgtgattatttatttaaaaaaaaaaaattctgtcaTTTCTGCTTCTCTGTGTTGAATATTTGAACATTTCCCTTTCCTAAGTGGACACCCTGTGTGGGCCAACATTTTTAATCCATTTCTCTTGGTAGAGGGTGAAGATTTAAATTTTGACTGCATATTTCAAAACTTGCCTTCAAACTACTGTGGTACTGATATATGAATATttcttaattataaataatgcaacatCGCTGATTATCAAGttcttcaaatatttgttcAGATTTTAAACTTGATCTGTGTTCTCTGTGTGAAT

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005503 True 2808 mRNA 0.42 2 2566389 2569710

Neighbor

gene id symbol gene type direction distance location
AMCG00005504 hnf1b coding upstream 889 2546393 ~ 2565500 (+)
AMCG00005484 NA coding upstream 45435 2512222 ~ 2520954 (+)
AMCG00005483 LOC108431323,LOC108278759,LOC100705065,LOC107714048 coding upstream 64662 2495360 ~ 2501727 (+)
AMCG00005482 NA coding upstream 72152 2487213 ~ 2494237 (+)
AMCG00005512 aldoc,LOC107581922,LOC107661747,LOC107587231 coding upstream 81937 2480675 ~ 2484452 (+)
AMCG00005502 synrg,LOC107727910 coding downstream 13689 2583399 ~ 2638908 (+)
AMCG00005493 NA coding downstream 264787 2834497 ~ 2844701 (+)
AMCG00005494 rab34,LOC108443499,LOC102306323,LOC102777300,LOC108278203 coding downstream 280382 2850092 ~ 2857112 (+)
AMCG00005492 NA coding downstream 297261 2866971 ~ 2871873 (+)
AMCG00005490 sdf2,LOC106602908 coding downstream 323595 2893305 ~ 2896669 (+)
G152397 NA non-coding upstream 243044 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 1104450 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 1107642 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1312430 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1508994 1057185 ~ 1057395 (+)
G152644 NA non-coding downstream 502240 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 614111 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 629622 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 690500 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 1154203 3723913 ~ 3761827 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 55713 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 619589 1929455 ~ 1946800 (+)
G152337 NA other upstream 762486 1799811 ~ 1803903 (+)
G152267 NA other upstream 817455 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 1048809 1509502 ~ 1517580 (+)
G152588 rpl23a other downstream 275507 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 696664 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1712807 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 1990503 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 2645103 5214813 ~ 5241776 (+)

Expression


Co-expression Network