AMCG00005506


Basic Information

Item Value
gene id AMCG00005506
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3173579 ~ 3179680 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005506
ATGCGACgcaatggaaaaataaacgGTAGCACTACAGAGAAGGAGCAGATTCTTTCTGTGAACGTGTCGATCAACCTGCCTTGTACCCGTGTTGGAAATGGCGGCCGACAACTAGCAGACGCCAACTTCAAACCCAAACCGACAGGAAGGGCGGTTCCCACTCTCCCTAAAGTGGGGAGTAAATCCGGGTCTAATCATAAGAACAGTATGGACAGCAAGAATGACAAACCCTTGGATTTTAAATCTCGGGAGGGCAAATCGATGGATAAGAAGGAGTCTGTGATGATTCTGAACGGAGTCGTGGCACTTAACGCTGGTTACATTACGAACGGTTTCCCAATCAAGCCGGTGCCTGACAACGATGGCAGCGGCTCAGAGAGCGGATACACCACACCCAAGAAGAGGAAAGCCAGGCGCAGCAGCGTCCGCAGCCTGGAGAATGTGACTGTTCTGCCCGAGAAAGCCATGCAGCAGGGAGCACCTGGTCCTAAGCCGGAGTCAGAACTTTTCAACGTGGAACTTGCCGAAAAAGTGGCGAGCATGCGGCTGGATGGACCCAAAGCCGTTGCCAAAGCCGACCCCCTGTCTGGAGCTGCCCGGGCAAAGGCCGTGCCGCTTGTGGCTGCCGGAGGGGCGGGGGCAGTGCCCGTGGGGCTGACGGGCGAGTTGCAGAGGAAAAACTCGGACAGTAAGGCTGCGGGCACGGCTGGTAAAAAATTCGACGAGAGGCCTGGTAAAGCAAAGCTTGCCACGGCCTCCACGAGTTCAAAAGAGGACtcgtggactttattcaaaccTCCCCCTGTGTTTCCCGTGGACAATAGTAGCGCCAAGATCGTCCCCAAGATAAGTTATGCAAGCAAAGTAAAGGAGAACCTTAACAAagcagcccaggccacaggggAGCCCCAGTACACCCAGGTGCCTGCAAGACTGTCACAAGTTCCCATGTCTGCTATGAAAACGGTCTCTGGGGCTAGTTTTACCAACGGCCCGGTCTCGGGAGACGCAAGCGCATGCTCCCTGGCCGGGGCCCTCTTCGTCTCTGCTGCTAGTACTGTACCGCCAGGCTCCTCACTCACGGGGGGTGAGAATGTAGCTTCATCTCCTGACAACAGCAGCGGCAACGCCCCTACCCCTTCAGCCGTCACTGGTGAACAGAGGAAATCCAACCTTTTCGTTTACCCTTTGACCCCTTCCAATATGCAACCCGGGCTCCCCAGTGCCCACGCCGTGGCTCTCTCTGCTGTTCAGACACATCAGAAAGCCCTGGGGGAGATCTTCCAGAACCAGTGGGGGCTGTCCTTCATCAACGAGCCCAGCGTGGGGCCCGAGGGGGCACCGGGGCGGTCGGCGGTGGAGGGCAAGATGGCCGAGGTGACGTTCCAGGGGGAGTGTACCGCCGCCTTGACCTCCGAGGCTCTGCTCTTGGGACGGGAGCGGCCGTTGTTCCCCAAGGCCTATGAACTGGACAAACGGACTAGCCCCCAATCTCTTGGCAGTGTTTTAAAAGTGTGCTCCCCTGCAACGTTTGTCAGTGAGGGGGGCACGCCGCTTCAGCCCCACGAACTGGACCTCCAGAAAGGCGAAGCTGGGACCCTAGGTGCAATAGTGTTTGCTTCTTCTAAGGACCTTGGTGCTGAGTCACCGCAGGCCTCCCCAACTAACCCTGTTATGGCCGAGGCCAAAGAGCACGGCCAGCCGAAGGGCTTTGACAGAAGGTGTAGCTTGGGGTCGTTTGATCTTAAAGCTGCTGTTATTTATCACACTAAAGaTCCAAAAAGAGTAGTCCATTACAATAAAACCAAGGATGGACCAGGACAATGAGGTTGCGATTTGAGAACACTAGCCTGCTTTTTACCTGAACGCAGCAGCTACAGCTGCCTGAAGGTTATATCTGctcctttaaaaaagaaatacatacaatgcGTAAATGAATCTTTCACTTTCATAGTGGAACCAAGAAGGAGTATCCTGCAACAGAGACTACAATGTGGAATAGAAAAAGCGAGGAACTGGAGAGGACGAAAGGGAGAAATGTCAAAATGGAATGGTAAAGGGGATAAAAGGAAGGAGAAAAAGAGGCTTTTCTGAGGAAGTAAAGAAGAGTCTGTGGTTTCACGGAGCTGCCTCAGCAGACCTACAGCCCAGACCTGCGCACATTCAGAGGATAGCCTCGACTTCTGGTACAGACTAGAGTATCCTGGCTGAAAGACTTTGTGGAAACATGCTGTGGGCTCGCTGACccgcaacaaacaaacaagcaaacaaaaacacttggGCCTAACGTTTCCTGCTGTGACGCAGGCTTGTGGAACCACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005506 True 2323 mRNA 0.54 3 3173579 3179680

Neighbor

gene id symbol gene type direction distance location
AMCG00005509 NA coding upstream 1644 3151681 ~ 3171935 (+)
AMCG00005490 sdf2,LOC106602908 coding upstream 276910 2893305 ~ 2896669 (+)
AMCG00005492 NA coding upstream 301706 2866971 ~ 2871873 (+)
AMCG00005494 rab34,LOC108443499,LOC102306323,LOC102777300,LOC108278203 coding upstream 316467 2850092 ~ 2857112 (+)
AMCG00005493 NA coding upstream 328878 2834497 ~ 2844701 (+)
AMCG00005507 nlk coding downstream 21821 3201501 ~ 3202760 (+)
AMCG00005508 nlk,nlk2,LOC107682651,LOC107756449,LOC107666197 coding downstream 50009 3229689 ~ 3256106 (+)
AMCG00005499 NA coding downstream 105190 3284870 ~ 3295314 (+)
AMCG00005500 NA coding downstream 125209 3304889 ~ 3306844 (+)
AMCG00005522 NA coding downstream 454053 3633733 ~ 3637811 (+)
G152644 NA non-coding upstream 82924 3071950 ~ 3090655 (+)
G152397 NA non-coding upstream 850234 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 1711640 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 1714832 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1919620 1245031 ~ 1253959 (+)
G152655 NA non-coding downstream 4141 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 19652 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 80530 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 544233 3723913 ~ 3761827 (+)
G152866 NA non-coding downstream 1079186 4258866 ~ 4260635 (+)
G152588 rpl23a other upstream 323971 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 662903 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 1226779 1929455 ~ 1946800 (+)
G152337 NA other upstream 1369676 1799811 ~ 1803903 (+)
G152267 NA other upstream 1424645 1745960 ~ 1748934 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 86694 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1102837 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 1380533 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 2035133 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 3254841 6434521 ~ 6437078 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location