AMCG00005507 (nlk)


Basic Information

Item Value
gene id AMCG00005507
gene name nlk
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3201501 ~ 3202760 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005507
ATGATGGCTGCATACAACGGCGGCGCCTCGGCGGTGGCGACTCATCACccgcaccaccaccaccagctaCCGCACCTCCCCCCCCCGCACctccatcaccaccaccaccccggCCAGCATCACCTGCACCCCGGCTCGGCCGCCGCCGTGCACCCGGTGCAGCAGCACGCCTCCacggccgccgccgccgccgcggCCGCTGCTGCTGCGGCGGTGATGCTGAACCCCAGCCAGCAGCAGCCCTACTTCCCCTCGCCGGCTCCCGGACAGGCCCCCGGCCCGGCGGCTGCGGCGGCCCCGGCTCAAGTGCAGGCTGCGGCGGTCAAGGCGCACCACCATCACCAGCACTCGCACCACTTACAGCAGCAGCTGGACATCGAGCCCGACAGACCCATCGGATACGGCGCGTTTGGAGTTGTCTGCGAGCTGGTCTGTGCGTGTGCTCAAACAGCCACCCTTCATTACTCTAGTCGGCTATGGGGATCCTCTTCAGAGATGACTCTTTTCCACGTGTCTGGCACAGTGCTGTAG

Function

symbol description
nlk Enables ubiquitin protein ligase binding activity. Involved in protein stabilization and transforming growth factor beta receptor signaling pathway. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in cytoplasm and nucleus.

NR:

description
PREDICTED: serine/threonine-protein kinase NLK

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005507 True 531 mRNA 0.68 3 3201501 3202760

Neighbor

gene id symbol gene type direction distance location
AMCG00005506 NA coding upstream 21821 3173579 ~ 3179680 (+)
AMCG00005509 NA coding upstream 29566 3151681 ~ 3171935 (+)
AMCG00005490 sdf2,LOC106602908 coding upstream 304832 2893305 ~ 2896669 (+)
AMCG00005492 NA coding upstream 329628 2866971 ~ 2871873 (+)
AMCG00005494 rab34,LOC108443499,LOC102306323,LOC102777300,LOC108278203 coding upstream 344389 2850092 ~ 2857112 (+)
AMCG00005508 nlk,nlk2,LOC107682651,LOC107756449,LOC107666197 coding downstream 26929 3229689 ~ 3256106 (+)
AMCG00005499 NA coding downstream 82110 3284870 ~ 3295314 (+)
AMCG00005500 NA coding downstream 102129 3304889 ~ 3306844 (+)
AMCG00005522 NA coding downstream 430973 3633733 ~ 3637811 (+)
AMCG00005526 NA coding downstream 440129 3642889 ~ 3644121 (+)
G152656 NA non-coding upstream 1314 3199332 ~ 3200187 (+)
G152655 NA non-coding upstream 14513 3183821 ~ 3186988 (+)
G152644 NA non-coding upstream 110846 3071950 ~ 3090655 (+)
G152397 NA non-coding upstream 878156 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 1739562 1461724 ~ 1461939 (+)
G152657 NA non-coding downstream 57450 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 521153 3723913 ~ 3761827 (+)
G152866 NA non-coding downstream 1056106 4258866 ~ 4260635 (+)
G152906 NA non-coding downstream 1089270 4292030 ~ 4292882 (+)
G152943 NA non-coding downstream 1329561 4532321 ~ 4534824 (+)
G152588 rpl23a other upstream 351893 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 690825 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 1254701 1929455 ~ 1946800 (+)
G152337 NA other upstream 1397598 1799811 ~ 1803903 (+)
G152267 NA other upstream 1452567 1745960 ~ 1748934 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 63614 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1079757 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 1357453 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 2012053 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 3231761 6434521 ~ 6437078 (+)

Expression


Co-expression Network