AMCG00005510


Basic Information

Item Value
gene id AMCG00005510
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2460248 ~ 2471851 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005510
gttttatttagtattaataTAACATCTTGAATTATATAGACGGAACAATATAAGTCGGAtgagtttatttgtttgccGTGTGCAGGTGGTTTAGATGCCAAAAACCCCAACATGTCTACCTGGAGGCGATCATTAGTCAGTGTTTCGGAGAGTGATAACCTTGATCCCAGAGGAAAACCAGTGAGAAGGTCAACTGGAAGGACTCCATTGAAAAGCCTTCAGAATGAAGTGTTTGGCCTGCAGTTGTCCACCCCTCCATCCATGCCAACACCTGTGTTGGGCAGTCTCAGAGTCAAGGATGAAGAGGTTAACTCGCATCACAGTTGCCCTGCTTCGAGAGGCATCTCTGTCATTGTGGATGCCAAAAAATGCACTCCCTTTAAGTCTCGCTTACTGCCTCCAACACAAGAAGGATTTCTGAAGGAGAATGTCGGTGCTTTGAAATTGATGAAAGATGACGATGCATTTTCCTTCGACATCCCTGTCCCCAGTCCCCTCTCGGGAGTGCGGACGGATGAGACCACAGCCCTCCAGCCTGATGTGACGGCTGTGCCTGAAACCATACATCCTGAAGCTGACATCCCTCAGACGGAGACAGAAAGCACTGAACACATGTCAGACACTGGTGCTGCGGGGCTGGACAATATCCCAGATGAGCCCTCGGGTGCCGGTGTGCCCGATGGAAGTGAAACCGCAACTCCTTACAATACAGAGGGTGCCGAGCGAGAAGACTACTCAAATGAGGACGGCGCGTATTCTGCTGCATCAGTGGGTGAGGGCGTCGAAGAGCCAAACGGTGAGTGCAGTGTAGGTGACTTGGCCTTCAAAACCTTTCGTGTCGATGGAGAAGAAATCGAAATCCGACATGTCCTTGAGCATTCCAAAGCAGAAGCCCCAGAGTCCACAGAGGGACCGATTATGGAGAGCTCTTGTGTCTCAGAAGCCAGTGTCTCTGAAGCCGATGTCCCTGAGAGCATGGGGGCCTTGCAACAATTGTCTCCCCTGCATTCCAGCATGTTCCACAGAGAACTGGTTGATACGTTGAGAAGCCTTTGCAGCAATGCAGAACAAGACACGGCTAATTACTCCGAGATTTTAGAAAACCACACCAGCTTCTCCACCAATGAACTGTCTCTTGGGCTTCCATGTGAGGCCTGCACTGTGCCAACCCCTTGCATGGGGAACGCTGAGGGTTCGGAGACGAGAGTACCTGCGTGTGACTCGAGCCCTGGAGCTGAAGTAACTCTTCAGGCTTCCCCAGAAAGTGAACCAGGGCATTTAGAAACCCAGCAGAGTGAAGACCGTGAAAGATCATCTATGCCTTTGGAGATCCCCACAGATTCACATTCTGCAAATACTGGTGTCGCTGAAGCTGTAGCTGTTCAGGAGACATCTGAGCAGACTCCCACTGCTGACCTACACTATGAGCCGGTGTCAGCGGAACTTAGTCTGCAGGAGGGTGTACAGAGAGAGATTGTGATGCACCCTGAAATGGCTCCAATGCTTAATGCTTCAAAATTGCAGTCTCTGGATGAGAGTGTGATTGGACTGGCTCTCCTGGATGCTGAGAAGGGCTCTGCTTCTTTGGCAGAAGACAGCGAGTCCATGAAAGTTCAAGAGAGAGGCTTGCGAAGTGAATCCCTCCATGAGGCCGTAGCTGTAGACTGTGTGTTACCGGTGGAAGTGAAAGCAAAGCCTCACCATACAGTCTTAATTCAGAATCTGTCGACATGGGGTTTAGAATCTGAAAGCCGTTTGGCATTTGAGGAGAAATCTTTGGCCTTCCTGCCAGACTCTTCCTTCGGGGGATCTTTTTCCAAGTCTTTCCTGAATGTCCTCTCTACTCCGGTGCAGAGGGCCCCGATTCTGAGCAAAAGCCTCCTCTTGAAGATGGCAGATGGGGATTCTGCTGACAAACGGGACATTTCCACCTCTGGGGTTGAAACCGGCAGCATCTGTGATGCAACGGATAAGGATGACCGGCTGCTGAGCCCACGGACTGATTCGCTCTGTGACTTCCTTCGGAGTGGCAAGAGGGAACTTGGGAGCCCTTGTGTTAGCAGCATGTCCAAGCTGTGGAGAGGGAGCCAGCAGAGCCCCCTCCTCCAGCCGCCGCTCAATTCGACGGTGGCCAGTCCTGCCTCCAGAGAAGACTGGGATATCAGCGTGCTCTCATCCTTGGACGAGAAGTCCCTGCTGAACAGCCACGAGAATCCGACAGTTGCAACGATTGCTGCCCAGGAGCCTGATGACAAGGTGCTGCCCGGTCCAGGATCTCCCTCCGCTAGAAAACCAGGCCTGTGCAGTTTGTCTCAGACCAAGGCCCgggctctgcagcagcagcttctGCAGATGGCTGAGATCCTGATGTTCCCCCTGCCTGCGGGAAATGGAGCCACCCCCGCGGAGCGTCACTCGGCGGGCACCTGGACCACCCCCGTTCAGCTGGCTGAGCACGGCGTCAACACCTCAGAGCTGtttgagaggaagagggagtTCTCGGTGGCCGAAATGGGGACCAATACGGATTCTTTGCTTTGGAACCTGGCCCCCGGCAGTCTGGCCTCGGTCCCCCGGGCTGAGCTGGAGTCTCGGCTGACCTCGGCGCTCATCGTGGCCGAGGCGCTCTCCCAGCAGCTGGCCGCAGGCAGGGTCCACAGTACCCAGAATCGCCTGGGACCCTCTGACCTCCGAGTTAAGTTTGTCCAGACTGATCACACTGAATTCAACCAGGGTGAGCAGCAGTACAGACAGCTGTTTGCCAGAGCTGTGGAGCGCAACCAGTCCTTGGAGCTCCAGCACGAAGAGCTACAGACACTCTTCCAGAGGATGCTGGACACGAGGGTGGGGGTGGTCTCCATGAGCACAGATGCAGCTGATGCCCTCTCAGTGGCTAATGAAATCTTCAGTCATGCCAGAGAGGATCAGGAAGCTAACGTCAAGCAGATGTCTCGGATGCGACAGCTGCAGGCACAGAGCTTGGAGGTGCTGAGGAAGATGAAGGAGCGGACCCAGGagagcctgagagagagggatgacaTGAGGCGGCTGATGGAGGACGCGCTTCGAGTCAAAGAAGCGGCCTACGGTGTTGTGGACAACGTGAGGTCTCACGCTGCTGCCCGGATCAGGGAGCTGGAGCTGTCACTGGGCTCCCACCAGGACATCACTGCGGCCCTAACACTGGCCTGCCAGCAGCAGGTCGCTCTGAATAAGGAGTATGTTGAATCATTCCAAACCACCGAAGAGCTCTACAAAGACATGGAGTGCGATCGATTAGAAATGGATCAGAAACTGAGTAAGGCTACCAGTGTCCTTCGGCAGACCTTCCCAGTTCTGTCAGCGCTGCGTGCGGAGGCTGAGTTTGCCCTCCGTGAGAAGGAGCATATGAGGGTGGAACTGGACCGAGCAGCTGAAGAGAGAAATAGGGTCCAACATGAACTGGCGCAGTCTGAGTGTAATCTGAACAATGCAATAAAAGAGATTGGAGACCTCCGACTGCACGTCACCATCATGAATTCAGAGGTGGGCGTTCTGCGGGAGCGGCTGGGGCAGGCTGAGGGGGAGTGCGCCCGGCTGCAGCACCGTAACCAGGAGCTCTCCGCAGCCGAGAGAGAGCTGCATGAATGCACCCTGCAGCTCCAGCATGCAGCAGAGCTGCAGACACGGCTCTCCTCCGTGACGGAGTTAAACGAGTTCCTTCAGGAGGAGAACACCCTGACCAGGGAACAGGCATTGGAGAACGAGGCCCTGGTCAAGACCCACCTTCAAGCCCTGAGGGAGCGCAACCTCGAGTGTGAGGACCTGAAACAGGCCGTGTCTGAGCTCAGGCGAGAGCTGGACAGCACCCGGGGGCGAGCGCGCAGCATGCTGTTGAGCATGGGGGAGCAGCTCAGCCAGTCGTCCCTTCAGGTCCGCCAGCTCGACCGCCAGCTGCGGGGCCTCGCTGCCACAATCCTGGACACGCGCGGTGCACGGGACCCGAGCTCCCCCTTTAAGGAAGACGCCCCCTGTCCAGCTCTGCAGACCCCCCGCCACGGCCCCGGCTCTTTTGTGGGCACGGTCCTCGATGCCCTCACCACGGAGCTGCCGGAGGAGGGTGATGACCGGCACACAGACACGGGTCCAGAGGAGAAACCAGCGGACGGACTGGGAAGTGGATGCAGTGCTTTTACTCGCGTCGTCCACACCGCCCCACCCAAGACTGCCGAGGGGACCGAGGTCAATCTAGTGGACATGCTGTCCGGCCTGAGAGAGACGGTGTCTGAACTCTGCTCCTCCCTCCCGGAGCTCCGGGCCACCGAGGCGGCAGAGAAGAAGGAGCTGCGACGGACGGTGGCCGAGCTGCAGGAGAAGAACAGTGCTCTGACCTGGAAGTATGACGCCGATGTTGAAAACCTCCGAGAACAGCTCCATGCCCTCCGAGCCCAGGCGGAAAAGGACCAGGTGATCCTGCAGCAAAAAATTGAGgaagaaaaaaggcTGAAGAAAGCCTGCAAAGAAATGGAGGAATACACCGAGCTCTTTCAGCAGCAGAGATTGGAAAACACAgtgCTGCGCACGGAGCTGGCGGGGGTGAAGCACTCTCTGCAGCAGGCCCAGGTGGAGGCACGCACCCTGAGGGAGGAGATGCTCAGCAGCGCCGGTCACACAGGACAGGGGCTCTCTTCTGTGGATGAAAAAATTCTTCTGCGCAAGGAGcTGGAGAACCTGAAGCGGTATGCGATGGAGATGGAGGAGAGCAGGAGCAAGCTTCTGGACAGAGCCAAGAGACATCGCTCCGTGTATGAAGAGAACCAAAGGAAAATGGAGCAGGAGCTGCACTGTCTGGATGACATGATTGAAACTGTGAGAAAGactCTGTCCTCCATTCCAAGTGTTGTTGACGGCTGTCCGGAGCTCCAGGAACTGAAATGTTATGTGAACTAACTTGGCACctgtttatatttgttcttaatatatttttttatttaaaatgttcaataaaatgtttctaattttcac

Function

GO: NA

KEGG:

id description
K21764 SPAG5; sperm-associated antigen 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005510 True 5004 mRNA 0.55 24 2460248 2471851

Neighbor

gene id symbol gene type direction distance location
AMCG00005511 NA coding upstream 2676 2447382 ~ 2457572 (+)
AMCG00005513 NA coding upstream 15165 2417078 ~ 2445083 (+)
AMCG00005515 LOC102196260 coding upstream 44660 2410567 ~ 2415588 (+)
AMCG00005516 NA coding upstream 50300 2408557 ~ 2409948 (+)
AMCG00005514 nxn coding upstream 55484 2387143 ~ 2404764 (+)
AMCG00005512 aldoc,LOC107581922,LOC107661747,LOC107587231 coding downstream 8824 2480675 ~ 2484452 (+)
AMCG00005482 NA coding downstream 15362 2487213 ~ 2494237 (+)
AMCG00005483 LOC108431323,LOC108278759,LOC100705065,LOC107714048 coding downstream 23509 2495360 ~ 2501727 (+)
AMCG00005484 NA coding downstream 40371 2512222 ~ 2520954 (+)
AMCG00005504 hnf1b coding downstream 74542 2546393 ~ 2565500 (+)
G152397 NA non-coding upstream 136903 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 998309 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 1001501 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1206289 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1402853 1057185 ~ 1057395 (+)
G152644 NA non-coding downstream 600099 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 711970 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 727481 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 788359 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 1252062 3723913 ~ 3761827 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 513448 1929455 ~ 1946800 (+)
G152337 NA other upstream 656345 1799811 ~ 1803903 (+)
G152267 NA other upstream 711314 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 942668 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 1080946 1376468 ~ 1379302 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 32059 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 373366 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 794523 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1810666 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 2088362 4560213 ~ 4563020 (+)

Expression


Co-expression Network