AMCG00005511


Basic Information

Item Value
gene id AMCG00005511
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2447382 ~ 2457572 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005511
GCGCCTGAAAACAACACGACGTCCCGGGCCGTTAAAGCGGCAGGATGTTTCTGACGGTTCTGTATAAAACCAGCTTCATACCCATATCGGCAAAAGATCAAAAAAAGATGTCCCTGGCTATAACAGCGGAATAAAGACCTGAAAAAGGACGCATTGATTATAATCCGAGATGGGAGCTGACGTCAGTAAACACAAGAGGGAGCCCCTGCTGGAAGAGAGCAGCCGTGTGTCGGGCTGGCGGGGCCTGCTGTCCAGCGTGGGCCTGTCCCTCCCGGCGGGCCTGTGCCAGTTTGGGGCGCTGCGCTTCACCCGCCGCATGATCCGGGACAAGAAGCACCAGCCGGCGCTCGAGCCGCTGCTGTCCCCACCCAGCCCCGAGAAGACCTTCTTGGAGTGGCCTCTGCCTGGATTCATCTCCCTCTTCCTACCTGAGTTCCCCCACCGCAGCTTGCCTGGGAAGGAGCAGTTCCAGATCCTGGGCTACATCGCCAAAGGCTCCTATGGACCCATTCTGAAGGTGAAGGACCGGACCAAGCAGAAGACATATGCGGTGAAGGTTTTGCCCAAATCGGAGATACTTCGACATGGTGTGCTGGAGCAGTCCAAGGAGGAGGTCATTATTCAGCGGCAGGTTCGCCACCCTTTCCTCCACGACCTGCAGGACTGCTGGCAGACACAGCGTCACCTCTTCATTATGTGTGAGTACTGCAGCAGCGGAGACCTGTACACCTACTGGACCATGATAGGGCAGTTCGGGGAGGACGCGGTGCGGGTGTTTGCGGCTGAGCTGGGCTCTGCGCTGGGGTTTCTCCATGACTTTGGGATCATTCACCGAGATGTGAAGATGGAGAATGTCCTGCTTAATGACCAAGGACACCTGAGGCTGGCAGATTTCGGGCTGTCTCGGCGCCTGGAGCGAGGAGGGAGGGCCTACACTATCTGTggcacaatacagtacatggCTCCGGAGGTCCTGAGCGGGGGTCCCTACAACCATGCAGCTGATTGGTGGTCTCTGGGGATACTGTTGTTCTCATTGGCTACTGGAAAGTTCCCTGTGCCTCCCGAGCCCGACCACCGCTCCATGCTGAGGCAAGTGAGGAGCTGTCAGTATGCCATGCCTCTGTCCTTCAGCTCCGCGCTCGCCCTGCTGCTCACCGAGCTGCTGTGCAAGAACCCGATGCGCCGCCTGCGCCTCCTAGAACGCTTCAAGAAGCAGCCCTTCTTTCGCGGCATGACCTTCGACACCCAGCTCCTGCAGAAAACGCCCATGGATCTGATTCTGGAGCTGAAGCAGCGGCCTGACCGCCCCTCCCGCGCCGGACGGGGCCTGACCCTCGACCCCTTCAAGACCTTCGACTGTGACCTGTCCCGCACCCTGGCTGCCACCGACCTCTCCCCCACTCTAACCAACATTGACCTGAGCAGAGCCATCACGCAGGGTGGCACCAGCTGAGCAGGGCCTGAGAACAAGGGGCGCTCGCACCCCAACTGAACAAACTCTTAAAGAAATGCCCTTCAGCTGCTCAGTATGCATCCTCAAGGTCGATCAGGCAGGGGTGATCAATTTGAGGTTCCAGGATCAGTGGTTTTGTAACAAACTGGATGAGAATGTTGGACAACTAAGTATCATCTGATTGGAGACCTTTTCCTGTATTCTTGTGACCTAATGTACCCCCTTTCTTATTTGTGGTGATCCACAAATGGGGACACCTCTCTGTTAGAGCCAATCAGCTGGAGAACCCAGCCAGACCAGCAGCTGGGACAGGAGAAGAGCCTGCTCTCACGGAAGACTTTAAACCACGACATGCCTCTGGCTCTGACCACAGTTCGCTTGGACGGACTGCACTGTGACTGACCCAGGCTTGGTGACCCCTGGGGGGTTGGGTTAGATTGTGATTTATGGTGCCTCCCATGGGGGTTGAGCATTTTTCTAGCTTTTTGTGCTCTCGCGTGCCTGTGGCCACAGCTGTGGAGCCAGAGATTAGACGAGGTGTTTTGATCGGTGCAGCTCAGACCCCAGCCAATGATAATGTGAGGgaggtaaaagtaaaaatgagtATCTGTTGCTTGTACTGTTTTCCTGCTGGGCCTCTTCACTCCGCAGGTGTCTATGCCTGCTGGAGCCACCGCGCTTTACACGGAGAACAGTGAAGGTGCACTTAAAGAAATCCTCTCTGAATGATTCCAGTGCGTATAGATCGCTCTGGCATGAAGCTGGAATCCTCCTGCTGGCTGCACTGAGTATTTCTCTATGGAAGGACAAGCTCTTCACTGGCTTATGGAGACAATCTCTCCTCCAGCCTTTTAAGCTTTGCAGTGCTGAGCCTGGGAGATCAGAGATGCAGTTTAGTGTAGCGGTGTAGTTCAGAAGCGTGTGTGAAGCTCGAACATTTTCCTTCCCCAGCAAAATACAAAGTCATAGGATAGTGTGTTAGCCATGAGCCTTGGCCTACCACGTCAGGTAGTTTAAATAGAGTGAGAAAGCAAATGGAAATCGACAGAGGCGCCTGCAGGCCAGCCCAGATCTCCTGCCTGTTTCTCACTCTCATCTCTCGAGCGACTCATTTGTACAGCACTGTGACATCTGATCGATGTCCTGATTTTTCCCTGGCGATCCACACAATATGTTTTCTCGCACAAGCCCATGCCTTGTGTGGCAGTGATTTTGTGAAACGCCACAGCTGCCGGCATAGAGTTTAGTAAAGCAGAGTACTGCCATCTCGCACAGTCTTCACATCAGAGACCCAATCACACATTCCTGTGGAAGGCCTGGGGGTAAAATGTCTGATTTGCAGGAAAATGGCCTAAAGTGGATGTGGGGTCAGAGGTTCCTTAATCATGTTTACATGTCTGTTCTGCTATGCACAGAGCACAGGCATCCAAGTGAGGAATTGTTAATCCTGATAAAAGTGTTCTAGTTTGTGAAATTAGCCTTGTCAACAGTGTCCTATTTTATAAAGCTTATAAACACGTTTTGTATGGGAATCGATACAGGTTAGGGAGCTGAACTGAGCCCATTTAGtgttaaaaacacagctgtgggTTACCTGGTTATATTTTCGCCTCctgcttaaaatgttttgcctttCCGTGTGTTTATGGGATGTACTCTTCCCAGTCAGGGCTGATGGAGCTTAATCAGGCGAAGTCACTGTGAAAGCTGAATAGGGCTTCGATAAATGTAGCCAGTGGGGTGACAAGCCATCGTTGTAATGATGCCAAAGTAGACAGCGTTCGCAATTGCTGGAGGGTCTTTTTACTGAgatattaaaaggaaaacccCCACCCTACTGTCCGAACTCCAGAGGTTTTGATCCTTCTGTATACTTTAATACTAAAAGCAATATTATGCAATGCAGACGTTTAgcatttggttattttatatGCTTTCAGATATTCTGCTTCTAAGTGTCATGTTCTTGTGTTGTAGAGCTGTTCACTAAATGTACATCATGGTAGCCACAAAAggaattaattacatatatatatattttttggtagGGATGTATTTTCAGAACTGTAATTACCAGCTATGCATTTTGTACCCGATAATCAGGAAAGTCTATATTTGTACTGTTATGATGTAATTAGATGGAATGCTGAAGTGATTTGGAAATCCTCTTTGATTTGTTTCAACATGCTGCTTGTTTGATGTGCACGTTGATCAGGGTGTACTTCCTACATCTTTGTGTCTGGGTTGTTGTATTTAGTTAAGTTTCCAAACATTTCCTTAATAGAttaatttgtaaacaaatataacCATTAATTGTTTCAAGTGTGTCTGCTTTATATGTAACCAcactttttttcatatataatacTGTACAGCATTTTATCAACGCTTCATGCATTTATGCATACACTGCACAAATCAGAATGCTGGCATATAttcac

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K17529 SGK494; uncharacterized serine/threonine-protein kinase SgK494

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005511 True 3897 mRNA 0.50 12 2447382 2457572

Neighbor

gene id symbol gene type direction distance location
AMCG00005513 NA coding upstream 2299 2417078 ~ 2445083 (+)
AMCG00005515 LOC102196260 coding upstream 31794 2410567 ~ 2415588 (+)
AMCG00005516 NA coding upstream 37434 2408557 ~ 2409948 (+)
AMCG00005514 nxn coding upstream 42618 2387143 ~ 2404764 (+)
AMCG00005518 typx,nxn,LOC106612785 coding upstream 97438 2344194 ~ 2349944 (+)
AMCG00005510 NA coding downstream 2676 2460248 ~ 2471851 (+)
AMCG00005512 aldoc,LOC107581922,LOC107661747,LOC107587231 coding downstream 23103 2480675 ~ 2484452 (+)
AMCG00005482 NA coding downstream 29641 2487213 ~ 2494237 (+)
AMCG00005483 LOC108431323,LOC108278759,LOC100705065,LOC107714048 coding downstream 37788 2495360 ~ 2501727 (+)
AMCG00005484 NA coding downstream 54650 2512222 ~ 2520954 (+)
G152397 NA non-coding upstream 124037 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 985443 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 988635 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1193423 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1389987 1057185 ~ 1057395 (+)
G152644 NA non-coding downstream 614378 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 726249 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 741760 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 802638 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 1266341 3723913 ~ 3761827 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 500582 1929455 ~ 1946800 (+)
G152337 NA other upstream 643479 1799811 ~ 1803903 (+)
G152267 NA other upstream 698448 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 929802 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 1068080 1376468 ~ 1379302 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 46338 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 387645 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 808802 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1824945 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 2102641 4560213 ~ 4563020 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_02567713_02578109 SGK494A coding CI01000053 null 2567713 ~ 2578501 (+)