AMCG00005512 (aldoc,LOC107581922,LOC107661747,LOC107587231)


Basic Information

Item Value
gene id AMCG00005512
gene name aldoc,LOC107581922,LOC107661747,LOC107587231
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2480675 ~ 2484452 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005512
CAGGCCTTTCTGAGAACCAGTGAAGATGACGCACCAGTACCCCGCCCTGACCTCCGAGCAGAAGAAGGAGCTGGCTGACATCGCCCAGCGCATCGTGGCCCCCGGGAAAGGCATCCTGGCTGCTGATGAGTCTGTTGGCAGCATGGCCAAGCGTCTGAACCAGATTGGTGTTGAGAACACCGAGGAGAACCGGCGCCTGTACCGCCAGCTTCTGTTCAGCGCAGACGAGCGCATCAACAGCTGCATCGGGGGGGTCATCTTCTTCCACGAGACGCTGTACCAGAACGCCGACGATGGCACACCATTCGTCAAAATGATCAAGGACAAGGGCATCGTCGTGGGCATCAAGGTTGACAAGGGTGTTGTCCCCCTGGCGGGCACTAACGGAGAATCCACCACCCAGGGGTTGGACGGCCTGTCAGAGCGCTGTGCCCAGTACAAGAAAGACGGCGCTGACTTCGCCAAGTGGCGCTGCGTCCTGAAGATCAGTGAGACCACCCCCTCCCAACTCTCCATCCTGGAAAACGCCAACGTCCTGGCACGCTACGCCAGCATCTGCCAGCAGAATGGCATTGTGCCCATTGTGGAGCCCGAGATCCTGCCCGACGGAGACCACGATCTGAAACGCTGTCAGTACGTCACAGAGAAGGTACTGGCTGCGGTCTACAAGGCCCTGTCTGACCACCATGTGTACCTGGAGGGCACTCTGCTCAAGCCCAACATGGTGACCCCCGGCCACGCCTGCCCCACCAAGTACAGCGCTGAGGAGATTGCCATGGCCACCGTCACCGCCCTGCGCCGCACCGTGCCCCCTGCCGTGACCGGCGTGACTTTCCTGTCCGGGGGTCAGAGTGAGGAGGAGGCCTCCATCAACTTGAACGCCATCAACACGTGCCCTTTGGGCCGGCCCTGGGCGCTCACCTTCTCATACGGACGCGCCCTGCAGGCCTCTGCCCTCAACGCCTGGCGTGGACAGAAGGAGAACGAGACTGCTGCCACCGAGGAGTTCATCAAGCGTGCGGAGgtgaaTGGCTTGGCAGCACAGGGAAAGTATGAAGCCAACCAAGATGGCAGTGGTGCCGCCTCCCAGTCCCTATTTGTGGCCAACCACGCCTACTGAACACCCACTGACACCCACATTCCAGCTTTTCGCCGACCAATAGGATCTTCCACTACTGCTACCTTCCATATCACCAACCAATCACAGGCCTGCGCTGTCTTCTGTACTTTAggattaaaaaattatatatgtatatcaaaaATCATCAATCAATACGGTAAATAA

Function

symbol description
aldoc Enables cytoskeletal protein binding activity and fructose-bisphosphate aldolase activity. Involved in epithelial cell differentiation and fructose 1,6-bisphosphate metabolic process. Located in extracellular exosome. Implicated in autoimmune disease of the nervous system.

NR:

description
PREDICTED: fructose-bisphosphate aldolase C

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0004332 fructose-bisphosphate aldolase activity molecular_function

KEGG:

id description
K01623 ALDO; fructose-bisphosphate aldolase, class I

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005512 True 1285 mRNA 0.58 8 2480675 2484452

Neighbor

gene id symbol gene type direction distance location
AMCG00005510 NA coding upstream 8824 2460248 ~ 2471851 (+)
AMCG00005511 NA coding upstream 23103 2447382 ~ 2457572 (+)
AMCG00005513 NA coding upstream 35592 2417078 ~ 2445083 (+)
AMCG00005515 LOC102196260 coding upstream 65087 2410567 ~ 2415588 (+)
AMCG00005516 NA coding upstream 70727 2408557 ~ 2409948 (+)
AMCG00005482 NA coding downstream 2761 2487213 ~ 2494237 (+)
AMCG00005483 LOC108431323,LOC108278759,LOC100705065,LOC107714048 coding downstream 10908 2495360 ~ 2501727 (+)
AMCG00005484 NA coding downstream 27770 2512222 ~ 2520954 (+)
AMCG00005504 hnf1b coding downstream 61941 2546393 ~ 2565500 (+)
AMCG00005503 NA coding downstream 81937 2566389 ~ 2569710 (+)
G152397 NA non-coding upstream 157330 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 1018736 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 1021928 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1226716 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1423280 1057185 ~ 1057395 (+)
G152644 NA non-coding downstream 587498 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 699369 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 714880 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 775758 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 1239461 3723913 ~ 3761827 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 533875 1929455 ~ 1946800 (+)
G152337 NA other upstream 676772 1799811 ~ 1803903 (+)
G152267 NA other upstream 731741 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 963095 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 1101373 1376468 ~ 1379302 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 19458 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 360765 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 781922 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1798065 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 2075761 4560213 ~ 4563020 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019799 aldocb coding NC_007132.7 CM002905.2 39608637 ~ 39639954 (-)
grasscarp (Ctenopharyngodon idella) CI01000041_00558941_00563881 ALDOA, ALDOCB, ALDOC.L, ALDOC coding CI01000041 null 558211 ~ 566505 (-)