AMCG00005514 (nxn)


Basic Information

Item Value
gene id AMCG00005514
gene name nxn
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2387143 ~ 2404764 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005514
acctTGCCGTTTTCTAATAATGCCCAGAATTCCTCACTCCCAACCCCAGAAACAATGAAGCTGTGGAATAAGTACAAGGTGACCAGTATCCCTTCCCTGGTGTTTGTGGACGCTGCCACGGGCAAGGTGGTGTGCCGGAATGGGCTGCTGGTGGTGAGAGATGACCCCAAAGGACTGGAGTTTCCCTGGGGGCCCAAGCCCTTTGCGGAGGTGGTGTCGGGGCCGCTGCTCAGGAACAACGGCCAGGCAACAGACAGCAGTGCGCTGGAGGGCTCCTACGTGGGGTGCCCACCGTGCCGCAGCCTGACGCGGGTGCTGGTGGAGTCGTACCGCACGGTGAAGGAGGCGGGGCAGAAGTTTGAGATCGTGTTTGTCAGCGCTGACAGATCAGAAGATTCCTTCAAACAGTACTTCAGTGAGATGCCCTGGCTGGCCATCCCCTACGCAGACGAGGGTCGGCGATCGCGGCTCAACCGGCTGTACGGAATACAAGGTATCCCCACTCTGATCCTGCTGGACTCCGAGGGCCGGGTGGTCACGCGGCAGGGCCGGGTAGAGGTGCTGAACGACCCCGAGTGCCGCCACTTCCCCTGGCACCCACGGCCCGTGCTGGAGCTGAGCGAGTCCAACGCCGTGCAGCTGAACGAGGGGCCCTGCCTGGTGCTGTTTGTCGACactgaggaagagggggagctTGAGCCGGCCAAGGAGCTCATCCAGCCAATCGCAGAGAAGATTATTGCGAAGTACAAGGCCAAGGAGGAGGAGACGCCACTCCTGTTTTTCGTTGCTGGGGAGGATGACATGAGCGACTCCCTGCGTGATTACACCAACCTGCCCGAGGCGGCGCCGCTGCTCACCATCCTGGACATGTCGGCCCGCGCCAAGTACGTGCGCGACGTGGAGGAGATCACGGCCGCCGTGGTGGAGCAGTTTGTGGGGGACTTCCTGGCAGAGAAGCTCAAGCCAGAGCCCATCTAG

Function

symbol description
nxn Predicted to enable protein-disulfide reductase (NAD(P)) activity. Predicted to be involved in circulatory system development; negative regulation of Wnt signaling pathway; and negative regulation of protein ubiquitination. Predicted to act upstream of or within Wnt signaling pathway and cell differentiation. Predicted to be located in cytosol and nucleus. Is expressed in several structures, including basal plate midbrain region; brain; immature eye; lens; and neural plate. Human ortholog(s) of this gene implicated in Robinow syndrome. Orthologous to human NXN (nucleoredoxin).

NR:

description
PREDICTED: nucleoredoxin

GO: NA

KEGG:

id description
K17609 NXN; nucleoredoxin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005514 True 981 mRNA 0.61 8 2387143 2404764

Neighbor

gene id symbol gene type direction distance location
AMCG00005518 typx,nxn,LOC106612785 coding upstream 37199 2344194 ~ 2349944 (+)
AMCG00005531 LOC108430460 coding upstream 138768 2223110 ~ 2248375 (+)
AMCG00005529 sebox coding upstream 171858 2213213 ~ 2215285 (+)
AMCG00005530 nle1,LOC107720672 coding upstream 177653 2202429 ~ 2209490 (+)
AMCG00005528 NA coding upstream 186162 2174065 ~ 2200981 (+)
AMCG00005516 NA coding downstream 3793 2408557 ~ 2409948 (+)
AMCG00005515 LOC102196260 coding downstream 5803 2410567 ~ 2415588 (+)
AMCG00005513 NA coding downstream 12314 2417078 ~ 2445083 (+)
AMCG00005511 NA coding downstream 42618 2447382 ~ 2457572 (+)
AMCG00005510 NA coding downstream 55484 2460248 ~ 2471851 (+)
G152397 NA non-coding upstream 63798 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 925204 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 928396 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1133184 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1329748 1057185 ~ 1057395 (+)
G152644 NA non-coding downstream 667186 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 779057 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 794568 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 855446 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 1319149 3723913 ~ 3761827 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 440343 1929455 ~ 1946800 (+)
G152337 NA other upstream 583240 1799811 ~ 1803903 (+)
G152267 NA other upstream 638209 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 869563 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 1007841 1376468 ~ 1379302 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 99146 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 440453 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 861610 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1877753 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 2155449 4560213 ~ 4563020 (+)

Expression


Co-expression Network