AMCG00005515 (LOC102196260)


Basic Information

Item Value
gene id AMCG00005515
gene name LOC102196260
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2410567 ~ 2415588 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005515
TCTATCGGTGccgcagggagggagaggggtgcGCTGGTGGCTGTCATGGCTCTCAGACGGGCTCTGCACTTTGTGTTTAAAGTCGGAGACAGACGCAAGACCGCCGCTTTCTATCGGGATGTGCTGGGAATGAAAATCCTGCGTCATGAGGAGTTTGAAGAGGGATGCAAAGCCACTTGCAATGGTCCATACGATGGGAAGTGGAGTAAGACCATGGTAGGGTTTGGCCCTGAGGACGATCACTTTGTGGCGGAGCTGACCTACAACTACGGCGTGGGAGAGTACCGGCCGGGCAACGACTTCCTGGGCTTCACTGTGCAGTCCAGGCAGGCAGTGAACAACGCCAGGCGGCTGGGCTGGCCCCTCACCGAGGCGGGGGATGGCATCTTCATCACAGAGGCTCCAGGCGGGTACCGCTTCACCCTGCTGGACCAGGACCAGCCCGAGACAGACCCTGTGCAGAAGGTGACGCTGGCTGTGTCGGACCTGCAGCGCTCCACTGCGTACTGGAGCTCCCTGCTGGGCATGCAGGTGTTTGAGAGGGACGAGGGGAGGAGGACGGTGCTGCTGGGCTTTTCAGACACGCAGTGCAAACTGGAGCTGCATGACATCGGTGGGCCAGTGGATCATGGGACGGCCTTCGGGAGAATCGCCTTCTCCTGCCCCAGAGAGCAGGTCAGGGGTTACAGACAGGGGGCAATGGGGAGGCAATGGGGAGGCATCCACATAGGAGAGGACCTCGGGGCTAGACGGCCTGGGCTGTGGTCTCTCCAGCTGCCGGGAATCGAAGCTCAGATGAAGAAGGAGAGCCAGAAGATCCTCACGCCTCTGGTCAGCCTGGACACCCCCGGGAAGGCCACAGTGGAAGTGGTGATCCTGGTTGATCCCGATGGCCACGAGATCTGCTTTGTGGGGGATGAGGCATTCAGAGAGCTGTCCAGGATGGACCCCGGTGCCAACACCCTGCTGGATGCGGCGATGACCGCGGACAAAAGCGATGAATGGTTTGCCAAGCGCAACAAGCAGAAGGCCTCAGCCTGAAGCTGTGGTGGGGGCGGCTGGACACGGACTTTCCTGACGGGTCTTGGGAGGCTCTGCTGGACCTGCAGGGAGGATCCAGAGTGATCCACAACATTCCTTGTCAAAAACTATCCTGTAGGCTTCTCTTCATTGctttccccctctttctctccccaccAGGCTCCTCCTCCAAGTCACCTTCTGGAGACACTgagttttattataatttattatgggTTGGGTTAGGACTGTTGAGATTTATTCCCATTCCTCAGAAGTTGACACAGGATTACTCTTTACAGTTAATCAGTCCACAGGCCTTTTACTATAAAGTGTGGCACCAGGCAACTATTATTTACTTCAAATCAGTGCAAAGCTCTTGTACATGATGTCGAAGGGGCTACCTCTCGTGTGCTGTATAACCTTCAAAAAGCTGACTGTTTCCCACTGAATAAAAGACTGAGAATCCTGA

Function

NR:

description
PREDICTED: glyoxalase domain-containing protein 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005515 True 1492 mRNA 0.56 9 2410567 2415588

Neighbor

gene id symbol gene type direction distance location
AMCG00005516 NA coding upstream 619 2408557 ~ 2409948 (+)
AMCG00005514 nxn coding upstream 5803 2387143 ~ 2404764 (+)
AMCG00005518 typx,nxn,LOC106612785 coding upstream 60623 2344194 ~ 2349944 (+)
AMCG00005531 LOC108430460 coding upstream 162192 2223110 ~ 2248375 (+)
AMCG00005529 sebox coding upstream 195282 2213213 ~ 2215285 (+)
AMCG00005513 NA coding downstream 1490 2417078 ~ 2445083 (+)
AMCG00005511 NA coding downstream 31794 2447382 ~ 2457572 (+)
AMCG00005510 NA coding downstream 44660 2460248 ~ 2471851 (+)
AMCG00005512 aldoc,LOC107581922,LOC107661747,LOC107587231 coding downstream 65087 2480675 ~ 2484452 (+)
AMCG00005482 NA coding downstream 71625 2487213 ~ 2494237 (+)
G152397 NA non-coding upstream 87222 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 948628 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 951820 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1156608 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1353172 1057185 ~ 1057395 (+)
G152644 NA non-coding downstream 656362 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 768233 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 783744 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 844622 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 1308325 3723913 ~ 3761827 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 463767 1929455 ~ 1946800 (+)
G152337 NA other upstream 606664 1799811 ~ 1803903 (+)
G152267 NA other upstream 661633 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 892987 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 1031265 1376468 ~ 1379302 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 88322 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 429629 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 850786 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1866929 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 2144625 4560213 ~ 4563020 (+)

Expression


Co-expression Network