AMCG00005518 (typx,nxn,LOC106612785)


Basic Information

Item Value
gene id AMCG00005518
gene name typx,nxn,LOC106612785
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2344194 ~ 2349944 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005518
ATGTCGGAGTTTCTGGTGCATTTGCTGGGGGAGCGGCTCGTCAACGGCGAGAAAGCCGAGGTGGACGTGCAGGCGCTGGGCAGCAAGCTGTCGCTGGTCGGGCTCTACTTCGGCTGCAGCCTGAACGGCCCCTGCAAGCAGTTCAACGCCAGCCTGGGCGACTTCTACAGCAAGTTCAAGACATCCTCGGAGCACAAAGACAAGCTGGAGATCGTCTTCGTGTCGTCCGACCAGGACCAGAAACACTGGCAGGAGTTCCTGCAGGAGATGCAATGGCCGGCGCTGCCGTTCAAAGAGAGGCACAAGAAGGTAAGCGGCCAGTGGAAACATTGTGACAGCGAGACGCAACTTGTGCTGCAACATGTTTGCATTGCAGcctttgtGGTGGCTCGCTTGTGGGTGCCAGGTGCTGTGTCAGAGCTGTCGGCAGGCCGAGCCGGGCTTGGTGCTGCCGCCTGCCTGTCCTCGTTAATCACGGGAGCCGCTGTTAGCACCATGCGAAGAAGGCCCGGCCTGCTTTCATCTTGGGACAGCGAGGCACGGCAGCGTGGCGCAGTCCGGGCCGGCCGCACCCTCCTACGTAGTGCGAAGGGGGCGAGTCGGCTGGCCGAGGCTGGGGACGGGGTGTGCGGCGTGCGCTCGGTCCCCCGTCGGGGATTCTCCAACCCCAGTTCCCGGCCCAGACTGGTGTGCAGTTGTCATAACTTGCCCCCGAACGATCGCTGCGGCTTCTTCAgtcgtctctgtgtgtgtgtgagcccAGGGACACGGGCCGTGATCGCCAAGCGAGTCCCCGGCTCCCTCTCCCAGGACGCAGCCACAGCGGTGGAGGGCTGGGCGTCTGCAAGATCTCCACAGCAGCCTGGCTCCACTCTCCTGGCTGGCACCGCTGCCTTACAAGGAGAACGACAGGACAGGGCCGTAAAGCCATAA

Function

symbol description
nxn Predicted to enable protein-disulfide reductase (NAD(P)) activity. Predicted to be involved in circulatory system development; negative regulation of Wnt signaling pathway; and negative regulation of protein ubiquitination. Predicted to act upstream of or within Wnt signaling pathway and cell differentiation. Predicted to be located in cytosol and nucleus. Is expressed in several structures, including basal plate midbrain region; brain; immature eye; lens; and neural plate. Human ortholog(s) of this gene implicated in Robinow syndrome. Orthologous to human NXN (nucleoredoxin).

NR:

description
Tryparedoxin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005518 True 933 mRNA 0.63 4 2344194 2349944

Neighbor

gene id symbol gene type direction distance location
AMCG00005531 LOC108430460 coding upstream 95819 2223110 ~ 2248375 (+)
AMCG00005529 sebox coding upstream 128909 2213213 ~ 2215285 (+)
AMCG00005530 nle1,LOC107720672 coding upstream 134704 2202429 ~ 2209490 (+)
AMCG00005528 NA coding upstream 143213 2174065 ~ 2200981 (+)
AMCG00005527 pitpnab,LOC108410689,LOC105890453,LOC101470402,LOC100703534,LOC103045464 coding upstream 173565 2157962 ~ 2170629 (+)
AMCG00005514 nxn coding downstream 37199 2387143 ~ 2404764 (+)
AMCG00005516 NA coding downstream 58613 2408557 ~ 2409948 (+)
AMCG00005515 LOC102196260 coding downstream 60623 2410567 ~ 2415588 (+)
AMCG00005513 NA coding downstream 67134 2417078 ~ 2445083 (+)
AMCG00005511 NA coding downstream 97438 2447382 ~ 2457572 (+)
G152397 NA non-coding upstream 20849 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 882255 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 885447 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1090235 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1286799 1057185 ~ 1057395 (+)
G152644 NA non-coding downstream 722006 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 833877 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 849388 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 910266 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 1373969 3723913 ~ 3761827 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 397394 1929455 ~ 1946800 (+)
G152337 NA other upstream 540291 1799811 ~ 1803903 (+)
G152267 NA other upstream 595260 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 826614 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 964892 1376468 ~ 1379302 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 153966 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 495273 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 916430 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1932573 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 2210269 4560213 ~ 4563020 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009102 nxn coding NC_007126.7 CM002899.2 16193809 ~ 16323750 (-)