AMCG00005519 (mate4,slc47a2,LOC107599236,LOC107599264,LOC106604060)


Basic Information

Item Value
gene id AMCG00005519
gene name mate4,slc47a2,LOC107599236,LOC107599264,LOC106604060
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2331855 ~ 2332896 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005519
TTCATCTCCCAGCTTATGGTCTTTATGATAAGCTTCGTTAGCACCGTGTTTTGTGGCCATCTGGGCAAGACCGAGCTATCTGCTGTTGCGCTGGCCACTGCAGTTATAAATGTTGCAGGGATCTCCATTGGATCAGGCTTAGCGTCTACCTGTGACACACTGATATCTCAGacCTTCGGCGGCTGTAACCTGAAGCGTGTGGGGGTCATCCTGCAGAGAGGGGTGCTGATCTTGCTGCTGGCCTGCTTCCCTTGCTGGGCTCTTCTCATCAACACCGAGCCCATCCTGCTGGCTGTGAAGCAGAGCCCCGAGGTGGCCAGGTCAGCTCAGGCCAGGGCTGGGGCTCGAGGGACCCTCTCTGTGCACACCATCTATATCAGTTAG

Function

symbol description
slc47a2 Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in plasma membrane. Predicted to be active in membrane.

NR:

description
uncharacterized protein LOC560089

GO:

id name namespace
GO:0006855 drug transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015297 antiporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005519 True 384 mRNA 0.56 3 2331855 2332896

Neighbor

gene id symbol gene type direction distance location
AMCG00005520 LOC106604060,LOC107718056,LOC102197200,LOC101483717,LOC102785299,LOC106946208 coding downstream 10212 2308678 ~ 2321643 (-)
AMCG00005521 NA coding downstream 31001 2284444 ~ 2300854 (-)
AMCG00005533 NA coding downstream 109079 2217709 ~ 2222776 (-)
AMCG00005489 NA coding downstream 258559 2070365 ~ 2073296 (-)
AMCG00005488 NA coding downstream 272602 2057982 ~ 2059253 (-)
AMCG00005485 NA coding upstream 251954 2584850 ~ 2585293 (-)
AMCG00005505 dusp14,LOC107672422,LOC107727911 coding upstream 318016 2650912 ~ 2651547 (-)
AMCG00005478 tada2a,LOC107661114,LOC106612794,LOC106581187 coding upstream 350741 2683637 ~ 2694104 (-)
AMCG00005477 traf4,LOC106581191 coding upstream 433650 2766546 ~ 2778432 (-)
AMCG00005496 nek8,LOC107672375 coding upstream 478330 2811226 ~ 2821222 (-)
G152452 mate4,LOC107718064,LOC107718062,LOC107699952,LOC106604060 non-coding downstream 13183 2294833 ~ 2318672 (-)
G152424 NA non-coding downstream 155901 2167604 ~ 2175954 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding downstream 385055 1941023 ~ 1946800 (-)
G152335 NA non-coding downstream 579117 1745953 ~ 1752738 (-)
G152320 NA non-coding downstream 638300 1692749 ~ 1693555 (-)
G152473 NA non-coding upstream 82176 2415072 ~ 2445097 (-)
G152652 NA non-coding upstream 827161 3160057 ~ 3160364 (-)
G152661 NA non-coding upstream 850925 3183821 ~ 3184685 (-)
G152665 NA non-coding upstream 868289 3201185 ~ 3201687 (-)
G152736 NA non-coding upstream 973790 3306686 ~ 3308431 (-)
AMCG00005532 NA other downstream 2171 2197354 ~ 2329684 (-)
AMCG00005461 eif4h other downstream 608355 1708683 ~ 1723500 (-)
G152271 NA other downstream 716358 1521742 ~ 1615497 (-)
G152277 NA other downstream 824227 1505940 ~ 1507628 (-)
AMCG00005419 NA other downstream 955382 1371342 ~ 1376473 (-)
AMCG00005517 NA other upstream 73629 2406525 ~ 2410247 (-)
AMCG00005491 supt6h,LOC107603297 other upstream 539610 2872506 ~ 2890448 (-)
G152645 NA other upstream 738964 3071860 ~ 3090714 (-)
AMCG00005525 LOC106567758 other upstream 1274065 3606961 ~ 3632712 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other upstream 1517240 3850136 ~ 3869209 (-)

Expression


Co-expression Network