AMCG00005521


Basic Information

Item Value
gene id AMCG00005521
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2284444 ~ 2300854 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005521
ATGGACGAGAATATGGATTCAGACGgcagttttcattttgagaAAACCTCAACCAAATCGAGATCAAGTGCTGGGACGGTTTCCAGCAGCTGCCTGTGTCATCTGCGAGCTTTAATACCGATCAACTACAGAGAGGAGCTGCTCCACATTGTAAAATTAGCAGGACCTGTGGTTATAAATGTTACAGGGATCTCCATTGGATCAGGCTTGTCGTCTGCCTGTGACACACTGATATCTCAGAAACTGCACAAGGCAACATGGGGCGGCTGGTCCACCGAGTGTTTGCAGGAATGGGGTCCCTTCATCCACCTGGCCATTCCCAGTATGCTCATGATGTGCCTGGAGTGGTGGACCTTTGAGCTCGGAGGATTCCTGGCAGGACTAGTGAGCGAAGTGGAGTTGGGATCACAGTCTGTCCTTCACCATCTGTCCACCACTGCATACATAGTAATTCTGGTCTCAGTGTTTGTAGCTGCTATAATCGGGGGGACAAAGGATGTCATCGCCTATGTCTTCACTTACGACCTGGAGATTCGAGAGAGGGTTTCGCAGGTGATGGTTCTGTTCGCTCTGTTCCACTTCTTCGACGGGACAGCGGTAGTGTGGCGGCCCTCGCCAGGGGTGTCGCTAGACTTCAGGTCACCCGGGGCTGACAGTGGTCAggaggaagaggtcCCGGCGGCTGGAGACCAGAAGGCCTCGGTCAGTGCTGGCCAGGATCCCGACGTCTTCCTTGAGATTGACCTCGGGAAACCGGAGATGTCAGAGGAGACGGAGCAGAAGATGAGCCACTTATCGGTCCTTCAGGACTGTGCTGAGGACCCAGAAGACAAAGTCCCTGTCACACTGCTGTCCCTTGGGGCCAAGGAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005521 True 873 mRNA 0.54 9 2284444 2300854

Neighbor

gene id symbol gene type direction distance location
AMCG00005533 NA coding downstream 61668 2217709 ~ 2222776 (-)
AMCG00005489 NA coding downstream 211148 2070365 ~ 2073296 (-)
AMCG00005488 NA coding downstream 225191 2057982 ~ 2059253 (-)
AMCG00005431 NA coding downstream 328384 1949221 ~ 1956060 (-)
AMCG00005421 lrrc75a,LOC107585608,LOC107664947,LOC108278186,LOC106935686,LOC107690424,LOC107744770 coding downstream 427239 1839567 ~ 1857205 (-)
AMCG00005520 LOC106604060,LOC107718056,LOC102197200,LOC101483717,LOC102785299,LOC106946208 coding upstream 7824 2308678 ~ 2321643 (-)
AMCG00005519 mate4,slc47a2,LOC107599236,LOC107599264,LOC106604060 coding upstream 31001 2331855 ~ 2332896 (-)
AMCG00005485 NA coding upstream 283996 2584850 ~ 2585293 (-)
AMCG00005505 dusp14,LOC107672422,LOC107727911 coding upstream 350058 2650912 ~ 2651547 (-)
AMCG00005478 tada2a,LOC107661114,LOC106612794,LOC106581187 coding upstream 382783 2683637 ~ 2694104 (-)
G152424 NA non-coding downstream 108490 2167604 ~ 2175954 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding downstream 337644 1941023 ~ 1946800 (-)
G152335 NA non-coding downstream 531706 1745953 ~ 1752738 (-)
G152320 NA non-coding downstream 590889 1692749 ~ 1693555 (-)
G152197 NA non-coding downstream 825782 1458237 ~ 1458662 (-)
G152473 NA non-coding upstream 114218 2415072 ~ 2445097 (-)
G152652 NA non-coding upstream 859203 3160057 ~ 3160364 (-)
G152661 NA non-coding upstream 882967 3183821 ~ 3184685 (-)
G152665 NA non-coding upstream 900331 3201185 ~ 3201687 (-)
G152736 NA non-coding upstream 1005832 3306686 ~ 3308431 (-)
AMCG00005461 eif4h other downstream 560944 1708683 ~ 1723500 (-)
G152271 NA other downstream 668947 1521742 ~ 1615497 (-)
G152277 NA other downstream 776816 1505940 ~ 1507628 (-)
AMCG00005419 NA other downstream 907971 1371342 ~ 1376473 (-)
G152133 NA other downstream 949004 1219327 ~ 1335440 (-)
AMCG00005517 NA other upstream 105671 2406525 ~ 2410247 (-)
AMCG00005491 supt6h,LOC107603297 other upstream 571652 2872506 ~ 2890448 (-)
G152645 NA other upstream 771006 3071860 ~ 3090714 (-)
AMCG00005525 LOC106567758 other upstream 1306107 3606961 ~ 3632712 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other upstream 1549282 3850136 ~ 3869209 (-)

Expression


Co-expression Network