AMCG00005522


Basic Information

Item Value
gene id AMCG00005522
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3633733 ~ 3637811 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005522
CACTGCAGCACGCTACACAGCTGTGCAGCACAGGAATTTAATCATCCCCAAAAATATCACAAAGCAGAAGCTGGGGACGGAAATGTGTCATGCTGTGCGTGGTCTCCCCTGCAAACTAGCGTCTGTTACTTCACTGGTGAACAGCACTAACTTTCTGGTTGCTCACAGCCCCTAGAACTCTGAAGACCATCTGTACGCAACGTTGGCCTTCGCACACTGCGCACAGCCGAGCCAACTCCGTGACAACTCTGGACGCACCTCTCCCAGCACTGTGCCCCACTGCCCTGTCCTGGTGAGCCCCACCCCACTCCAGCCACAGACCAAAGAAACCACTCAAACCAAGCTATGGAAAGCCACAAGATCAATCATCCTTTGGCTATTGCTATAGCAACGATCTTGGTCATGCAATTCACTGGCAATTTGTGTGATAGTAACAACATCACAGTAAATGCCACAGCTACTGCAGGAACAAATAGGGTGATCAACATCACCTCTTCAACCCCCATGACGGAATCCAAAACAGAGAGCACCCGGGCCACGACTAACCCTGCCCAGAAACCCACACCCTCCCCGTGTCACAATCTGATTCCCAAAGAATGGGAAATCACCGGCTTGATCATCTTGGGGGCCCTCATTATCGTCTGCACCCTGCTGCTGATCTCCACCACCGTCCTGGCCTGCAAGTTGTGCTTCCTAACGCGGACAGGGGGCGCCCCCCGGCAACCGCGCAGTAACGCCGACTTGCTGAGTGGCCAGAGCTACTGGCGGCCCGTGAGCACGGACGAGCCGGGGAGGGAGGCGGGCGTCTCCGAGACCAGCGTGATGATGGAGGAGGTCAAGGCCGAGGGGTCCCCGGCAGAGAAGCGGGCAGGGGAGGGCAGTAGTGCGACCGCGGCCAACGGCACGCCGGCCCAAGACGAGGGCAAGCCTGTCGGTGCCGACAGCGGCACCGAACCCGAGAGCGGCGGGGCCAGGCCCGAGGAGGAGCCCGGCACCACCGCCAGCGATCCACCGGATGTGGCAGACATGGCCCTGGTCGTCTAACGCAGCTAAATCACCACCCACGTGGCTCCGGAGTGGAAATGACACCCAATGAGCAGGAATTATATCTTCCAGTCGACATGCAGCACTGATACACAGGAGGCAACGCATTCTCTTTAAATGCTGTTTGTTCACCATTGCGTAAGgggtgtatgtatacatgtgtccTCGAACAGCTATTTCTATTTGAGtgattttcaaatgcttttcttggttttgtttgttttgtctagGCCTTCTGAAGAAattctgattattataattttttttaataaaatgacacCTCGCCTGGCAGAGGATAGACTCTCCCAGTCCCAATCTGTCCGCCTGCAGGGATAATATTTACATTCCTGGAACTGTACACTGTGGTTGGcaagttgtgtgtttttactgtATAGTGTGCACAATCGCCCATCAGATTGATTGTGTCTTTAGATTCCCAATCCTAATGTTCCTATTGTTCAAAGTCTTTGGGTTAAACATACATACTTAAATACAGTATAACTATCACTGGTAATCTCAGATGCAACAAATGAAGAACCGTATTTATAATGCTAGTTGCAATAGTTAAGGGCGGCTGTGATAAAAGgttaatttgtaaataatggATGACTAAATGagttacaaatgtgtttttagcaGCATTAGGAAACAAATTGACGCGATTCTCAAATTCACTGTACAAATCTAATCATTTTAACACTGCATTAGGatgcaaatgaaaagcaaataattttaaatgcctttttgtatttatggtACTATAGAATCTTAAGCTTGTACTGCACTGCTTTgactatacatattttttcatctttatttgtatttaatattttcagtaaaaCACGATAACACCACAGCACCCTACACATGTTTTGTGTATGTCATAACACACATACTCCATTTACTGACTTTGGGTGGTGGGGGACACTCAGCAATAAAAGCAAGTGCCTTTAAAAATGCACGTGGGGTGTTCCATGTATGATATTGTTCAAActgttcaaaaaataaaaaataaaatgatagtgtcattttttttttttttttttttttaataaaaggttgATACTAGATACTACAACTAAGTAGACAGATATAATTTGCACTAGACAGATATAATATTTCCTCCTTTATTGCATATAGATTCATCaagaatatacaaataatggTCATTTATAGCAGTAcgttactttttatttggagccaatcacatgttttgttcttgagttatgtAGGACGTTTAGTagtcaccccaaaactttgctttatgaggg

Function

GO:

id name namespace
GO:0050900 leukocyte migration biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04670 Leukocyte transendothelial migration

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005522 True 2315 mRNA 0.46 2 3633733 3637811

Neighbor

gene id symbol gene type direction distance location
AMCG00005500 NA coding upstream 326889 3304889 ~ 3306844 (+)
AMCG00005499 NA coding upstream 338419 3284870 ~ 3295314 (+)
AMCG00005508 nlk,nlk2,LOC107682651,LOC107756449,LOC107666197 coding upstream 377627 3229689 ~ 3256106 (+)
AMCG00005507 nlk coding upstream 430973 3201501 ~ 3202760 (+)
AMCG00005506 NA coding upstream 454053 3173579 ~ 3179680 (+)
AMCG00005526 NA coding downstream 5078 3642889 ~ 3644121 (+)
AMCG00005523 NA coding downstream 11036 3648847 ~ 3652715 (+)
AMCG00005551 wsb1,LOC107756317,LOC107746651,LOC107682796,LOC107592922,LOC107587373,LOC107672108 coding downstream 68842 3706653 ~ 3722896 (+)
AMCG00005550 NA coding downstream 101597 3739408 ~ 3740831 (+)
AMCG00005558 NA coding downstream 128203 3766014 ~ 3788578 (+)
G152657 NA non-coding upstream 373304 3260210 ~ 3260429 (+)
G152656 NA non-coding upstream 433546 3199332 ~ 3200187 (+)
G152655 NA non-coding upstream 446745 3183821 ~ 3186988 (+)
G152644 NA non-coding upstream 543078 3071950 ~ 3090655 (+)
G152397 NA non-coding upstream 1310388 2255365 ~ 2323345 (+)
G152764 NA non-coding downstream 86102 3723913 ~ 3761827 (+)
G152866 NA non-coding downstream 621055 4258866 ~ 4260635 (+)
G152906 NA non-coding downstream 654219 4292030 ~ 4292882 (+)
G152943 NA non-coding downstream 894510 4532321 ~ 4534824 (+)
G153080 NA non-coding downstream 1552716 5190527 ~ 5190796 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 362889 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 784125 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 1123057 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 1686933 1929455 ~ 1946800 (+)
G152337 NA other upstream 1829830 1799811 ~ 1803903 (+)
AMCG00005538 NA other downstream 644706 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 922402 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 1577002 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 2796710 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 2849907 6487718 ~ 6488782 (+)

Expression


Co-expression Network