AMCG00005525 (LOC106567758)


Basic Information

Item Value
gene id AMCG00005525
gene name LOC106567758
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3606961 ~ 3632712 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005525
TTCAAGACGGGCCAGATCAACGGAGACCTTCTGATCTACCACGTGCTGCTGACGCTGAAGCCTTACTATGCTAAGCCTTATGAGATCGTGGTGGACCTCACCCACGCCGGGCCCAGCAACCGTTTCAAGACCGACTTCCTGTCCAAGTGGTTCGTGGTCTTCCCGGGCTTCGCCTACGAGAACGTGGCGGCCGTCTACATCTACAACTGCAACTCGTGGGTGCGCGAGTACACCAAGTACCACGAGCGGCTCCTCACTGGCCTCAAGGGCAGCAAGAAGCTCCTGTTCATCGACTCCCCCGGGCGGCTGGCCGAGCATGTGGAGCCCGACCAGCAGAAGCTGCCCGCCGCCACGCTGGCCCTGGAAGAGGACCTCAAGGTGTTCCACAATGCTCTCAAGCTAGCACACAAGGACACCAAGGTCTCCATCAAGGTGGGCTCCACAGCAGTGCAGGTGACGTCGGCAGAGAGGACGCGGGTCCTGGGCCAGTCCGTCTTCCTCAACGACATCTACTACGCCTCGGAGATCGAGGAGATCTGCCTGGTGGACGAGAACCAGTTCACGCTGACCATCGCCAACCAGGGCACGCCGCTCACCTTCATGCACCAGGAGTGCGAGGCCATAGTGCAGTCCATCATCCATATCCGCACGCGCTGGGAGCTCTCGCAGCCTGACTCCATCCCCCAGCACACCAAGATCCGGCCCAAAGACGTCCCTGGCACCCTGCTGAACATTGCGCTGCTCAACCTGGGCAGCTCCGACCCCAGCTTACGGTCTGCGGCCTACAACCTGCTGTGTGCCTTAACCTGCACCTTCAACCTGAAGATCGAGGGACAGCTGCTGGAGACATCAGGGCTCTGCATCCCGGCCAACAACACGCTCTTCATTGTCTCAATCAGCAAGACACTGGCTGCCAATGAGCCCCACCTCACCCTGGAGTTCCTGGAGGAGTGCATCTCCGGCTTCAGCAAGTCCAGCATTGAGCTGAAGCACCTGTGTCTGGAGTACATGACACCCTGGCTGCTCAACCTTGTGCGATTCTGCAAACACAACGACGATGCCAAGAGGCAACGGGTCACCGCCATCCTGGACAAACTCATCACCATGACCATCAATGAGAAGCAGATGTACCCCTCCATCCAGGCCAAGATCTGGGGCAGCCTTGGCCAGatcacAGATTTGCTTGATGTGGTGTTGGACAGCTTCATCAAGACCAGCGCCACTGGGGGTCTGGGCTCCATCAAAGCAGAAGTCATGGCCGACACAGCTGTAGCTCTGGCATCGGGCAACGTCAAGCTCGTTTCCAGCAAGGTGATTGGGCGGATGTGTAAGATCATCGACAAGACCTGCCTGTCTCCCACCCCCACGCTGGAGCAGCACCTGATGTGGGACGACATTGCCATCCTGGCCCGCTACATGCTCATGCTGTCGTTCAACAACTCTCTGGACGTGGCCGCCCACCTGCCCTACCTCTTCCACGTGGTGACGCTGCTGGTAGCCACTGGGCCACTGTCCCTGCGCGCCTCCACTCATGGCCTGGTCATTAACATCATCCACTCCCTCTGCACCTGTTCCCAGCTTAACTTCAGCGAGGAGACGAAACAAGTCCTGCGTCTGAGCCTGACTGAGTTCTCCCTGCCCAAGTTCTACCTGCTCTTTGGCATCAGTAAGGTGAAGTCGGCGGCTGTCATCGCCTTCCGCTCCAGCTACCGCGACCGCTCCTTCTCCCCCGGCTCATACGAGCGGGAGACCTTCGCCCTCACTTCGCTGGAGACGGTCACTGAGGCCCTGCTGGAGATCATGGAGGCATGCATGAGGGACATTCCCACCTGCAAGTGGCTGGACCAGTGGACAGAGCTGGCTCAGAAGTTTGCGTTCCAGTACAATCCGTCCCTGCAGCCCAGGGCGCTGGTGGTGTTCGGCTGCATCAGTAAGAGGGTGTCCCACGGCCAGATCAAGCAGATTATCCGCATCCTCAGCAAGGCAAAGAGCTGTTTAAAGGGCCCAGATAATTATAACAGCCAGGTATTAATAGAAGCCACTGTTATTGCACTGACCAAACTGCAGCCACTTCTCAACAAGGACTCCCCGATGCACAAAGCACTGTTCTGGGTGGCCATCGCTGTGCTGCAGCTGGACGAGGTCAATCTTTACTCTGCTGGGACGGCGCTGTTGGAGCAGAACCTGCACACCTTGGACAGCCTGAGGGTCTTCAACGACAAGAGTCCAGAGGAGGTGTTCATGGAGATCAGGAAACCCCTGGAGTGGCACTGTAAACAGATGGATCACTTTGTCGGCCTAAACTTCAACTCCAACTTCAACTTTGCACTAGTGGGACACCTGCTGAAAGGCTACCgacacccctcccccaccactGTGGCGCGGACCGTGCGCATCCTCCACACGCTGCTGGCACTGGTGGGAAAACACCTCAACTGTGACAAGTTTGAGGTCAACACCCAGAGTGTGGCCTATCTGGCAGCTCTGCTGACCGTGTCCGAGGAAGTACGCAGCCGCTGCAGCCTCAAACACAGGAAGTCCCTGCTGCTCTCCGACGTGACCATGGAGAACGTCCCCATGGACACCTACCCCTTACATCACAGTGACCCCAGCTGCAGGACGCTGCGGGAGAGCCAGCCCTGGACGTCCCCCAAAGTCTCAGACCGATACCTGGTTGCCAACTACCCAACTGTGGGGCAAATCAGCCCCCGCACACGGAAGTCCATGAGCTTGGACATGGGCCAGCCATCCCAGGCCAACACCAAGAAACTGCTAGGCACAAGGAAGAGCTTTGACCACTTGATATCAGACACTAAAGCACCAAAGAGACCAGAGATTGAATCTGGCATCACCACGCCTCCCAAGATGAGGAGAGTAGCAGAAAATGATTATGAAATAGAGACCCAAAGAATAGCCAACTCCCAGCAGCACCCTCACCTGCGGAAAGTCTCCGTGTCCGAGTCCAATGTGCTGCTGGACGAGGAGGTCCTCACCGACCCCAAGATCCAGGCGCTGCTCCTCACTGTCCTTGCCACGCTGGTGAAATACACGACAGATGAGTTCGACCAGCGGATCCTTTATGAGTATTTAGCTGAAGCTAGTGTTGTCTTCCCAAAGGTCTTTCCAGTTGTccACAACTTACTAGACTCGAAGATAAATACCCTCCTATCACTGTGCCAAGACCCCAACCTCCTGAACCCCATCCATGGCATCGTGCAGAGTGTGGTGTACCACGAGGAGTCCCCCCCGCAGCTTTGGTTTCAATGGCTTGTGGAGCAAACCCAAATCCCGGAAGACGCCGTGCTGATCGTGAAGTTCCTGGATGCCTTGATCGACACCTACCTGCCGGGCATCGATGAGGAGACCAGCGAGGAGTCCCTGCGCACGCCCACGTCGCCCTACCCCCCGCCCGTGCAGAGCCAGCTCAGCATCACCGCCAACCTCAACCTGTCCAACTCCATGACCTCGCTCGCCACCTCCCAGCATTCCCCAGGAATCGACAAAGAGAACGTGGAGTTGTCCCCGACCACGGGCCACAGCAACAGCGGGCGCACGCGGCACGGCTCGGCCAGCCAGGTGCAGAAGCAGAGGAGCACTGGCAGCTTCAAGAGGCCCAGTATTAAGAAGATCgtg
>TU192393
CAGGAATCGACAAAGAGAACGTGGAGTTGTCCCCGACCACGGGCCACAGCAACAGCGGGCGCACGCGGCACGGCTCGGCCAGCCAGGTGCAGAAGCAGAGGAGCACTGGCAGCTTCAAGAGGCCCAGTATTAAGAAGATCgtgtgaaggaggaggaggagcgaCACGGGGGAATCTCCCAGCCAACCTTTCCAGACATGATgctgcacttttctttttcttttaagtttgTTCCTTCGTTTCATTTatcgttttgtttttattttacccgTCAAAGTCGGACAGTTTTGTCTGATCAACATTATTGAAGAACTGCCTgaatagtctttttttttttttttttttttgtttcagatttttgttcattttaaagccAGCCAGTGTTTCTGAAGCATTACTgaagactttatttttttcctttgtcataactagtttgttttttcttttaatcgtTATTTTCGCTGGAAGAAAGCACTGAAATTAACACTGCGGTAGATGTCAGAAAATGGAAGCCATTTTGTTGTAGATGAAACTCCTTGCTttatcatttttagttttttttttttttgccttttttatatataatattgaaaagTGTTATCAAAGACAATTTCTATGATTTGCACACTTTTCTTTCATCCACAGAACGTGGCTTTTTATCGTGGAATCGTATATATAACTACGTAAGTTGAAAGAATCTGCTAGTCAGAGCGTGCTGCACAATTCCTTTtagctgactttttttttgggggtgggggggttcgCCACTGGTGTTTTTAGTGTTGCCGATCGGTGACCGGAAacacttgtttttataaatgtaaattcagCAGGTTGCTAACAGGTACTAGTTGGGAATTCCCTTTTAAACCAAGGgcagtttgattttaaaaagtacgAAGTTCGAACTCAAGGATTCCTCCCAGGTGAGATTACAACCCAGGTGTCAGTCTTTGCGTATGGGGCACAGAAGAGCTGTAGAGGGGTCTCTGTGAAGAATGGCATTCATTAAGATGGATAAAATGTCCCAGAATGAAGTCTAGGGAGGAAAATCCCTACTGTCTTCACCAACCACATCCATTACCagaaacgaaacaaaaaacactgcaggGGACAAATACTAGCCAGATTATGACCCGTATACAGGAAGTTCACCGCTTATACTGACTGGTAATGTACTGTATCTCATATGTGTGGAGATTAGGATGGATGTTCCGGTTTGGGAACTCTTGAATCCCGATAGGTTTCAGAAACTCAGAAAGCAGAAAGAAGCATgatctctcacacaaacacacattttgggATGTTGTTCAATCCTTTGTGTGCCTTTGTCAGGGTTTTCAGATGTTTATAGtttgtacaaaaatgtaaaaggaaaaaactaagagAACCTTGCTTTGGAAAGTAAAAACAGGTACTAATTTTAGAGACTTGTGTgttctgcaaaatgtaataGCATTCTATCTTATAATAGTCAAATATACAATCATCAGTACCCCTCTGCCTGATAGTAATTGCCCTGTATAGCTAAGTATCCATTATGGagaatttgtgtttgttttttcagcattcattcttaaagaaataaaaaaataataaaaaaaaagacagtaaGACACTAGAAATACAACACGTACATGTAAATAGAAAAGcgcctttattttattgattaaaaaaaaaatacaaaaaaaaaaaaatcacactttgATTTGTTTACAGTCCAGAAGACAATAATGGATACAATCGTTATATGCAAAACCGATTTGCCAAAACGCGGTAACCTAGAATTGAAGTAAATACAAGATATAGTATTAACTCGGAAGTATCTCTATTTTACCCTTTTGAATGGTGACGGATATGTGTTGCAAGTGGACGAACGCGAGAGAACTGCTTTGAACGTTCACCTGTACTGTGGCAGCCATCTTTACAAGTCACACGTTGTGCGATACGATGCCAAGAAACATTcgaaagcattacaaaagccGATTACTGGTTGTGCGTCTCATATAGACTGTCCTGCCTTCCCTTTCGTGGTGTAACCTGCGTTTGGTGTCTAGCTATTTTCAGTAGATGGCCTCTTTCTTGTGGTCAATAGCCCCAATATATAAACAGTTTACTAATCTGACATTGAATACTCTAGGAGGTTAAACACGCATTCAGTAGcacatgtatttgtgtgtacatgtgtaaaGAGGCAGTAAACGCAGGCTTGCGCTGCACGGAAGCCTCTCGGTCCGCTCGGCCGTGCGCGTGCAACGAGATGATCGGTCTCAAGGGGGACAGATCCAGTGTACCATCATTAGTGGGCCATAGACTCTGCACCAAAGAGTAGCTTTGCACTAGCGAAAGGAAAATCAAGCctgtttctgattttttttttttacttttaaaagtgaTTTTTGTGGCTCTCTCATCCTGGGCATGTAGGGACGGATTTCCGTGTGCGCTTGTCGAGGGTGGTTGGTACGAACGGCTGTGCTTTACCTTTCACTGAACGCGACGCAAGTTGCACCGCGCCAGGGCCTCCCTTGGTCAGTCTGGCCCCCTTCCGCACTGCCTTGGCTTGGGCACCCCTCCAAGTGTCCTACAAAAAGACTGAAGCAAGGTCCCACCCTGGTGTTTTTCTAGGAACCATTCTTCACTTTTGGTTCTTAATCCATACTGCTGTGCAAGTGTGTCCCGTATGTGCGCGAATGTCGTTTCCAGCTCTCATAAATCCTTTTTCTTGGTTTGTTACTTCCCCAAACCGCATCATTGCACTTTTACTAATGCTAGAAAAGTGCAAGTAGAATACAGTAGCGTCTAGAGCTGATCTGTATTGTTGCCAGAATTAGTGTTCCGATTCAGTCCAGTTGTGTAGAACAGTTGTATTTCCTTACAATGAATGAAAACTGACATACtcgtattgtttttgtttgtttttttaattacttatgATTGCTAACTGTATCATAATATTTTGGCTGCTAATATTAGTGTTGTAGTATACTTCAGCAGTCTAGCTTTCAACTGTGCCCAGCATTGTTTTCTCCATAACAATGAATTCCCCTAAGCAAGCTCTGGCAAGCAATGATGTAATACTGGACAACACCACACTGTCTGAATGATCTGGAGAAGACCCAGagtatagtttttgttttcacgAAAGCTATGCGATTGTTGGAATTGGTGGACACGTCTGCTGAATCACCCTAGTGTGTGTTGTACACTTGAGGGAATGAATGAGAGATTCTGCAAAAGAAAGATCCAAGGCAGATGGCATTCGGAGTTGTTTTATGTGACTATGACTGCAGTTAGCTAGTGTGAGGCGCATCTGtaacaaaatgacaaacaacaCCTTTTAACAAGAACCAGCTTCCAGCAGTCTTAACCTTTTTCTTTCTGGATGTGATGGTGATGTGCTGGTTATGTAtcccacagaaaaacaaaacacaaatatgcatCCGCACGCACACTGCTGAATTGTGATGCGGTCGCCAGTTAATCTATTCTAGAGAGTGGGTGTCAATCGGAGAGAGGACAAATGGATACTGTGTAATGAAATAGTCACCATGTTAAATGGGttcattttgtttacaaatgttttatatacttGAATCACGAGAGTAAAAGCCTGTTTGAAACACAGTCCTCCCTCTCCAAGAGaggaaataaagggaaaaatgaaatggcttttaaaactgaataaaataagggTACCAAACATAATCTGACTAGTATTATAGAACTGAACATAGTATTATTAAAGAAACCAAAGTCTAGGAATACAGTATACAGTTTGCAATACAGTAGAAGAATAAGCTCTTTGATCAGTGGCTTTGAGAGACAAAGTACATCTGTAACCCAGTCAGCCTCaatctttacatatatatatatattatatgtctgtgtgtgtataatatatatatatatatatatatacacacacacacacacgtatacatacagaacacatacatgcacagtaTATAAGTGTATGACGTTACGTAgaattaatactttttatttgcGTAGTTGATTGATTATtgttaatttgatgttttatacTTATGAAATATGGACCAAACAAGAATTTATGTAATCCCTAAaggaagcattaaaaaaaaactgtctatATGGAGAACCTAAAGGTTAAAAGATGTTCAAGGGATGTTTTCAGGCACTTTACAGTCatttgtagttatttaatgtctgccCTACAAGCCTTTTCATGGTGTTGCACACAGTAAGCGAGGCGAGGCTGAAAAGAACGAAATGAAACCCTTTTTTTCACTCCCTTGGTTTTGAGGTTTGGTTCACGAAAATTCACGAAAATTCATGTCTAATTACAAACCTATCTGCACATCCTGATTTTGCTCTGTCTGTTACCCCGGCTTTGTGATCTGCAGTCTAAAACCAAATGCAAAACCATCTGGAAGAGAGAAACTAAGACAGACGAACtttcttgtttccttttctgttgtcatttttgtcCCCCCTATTGTGTAATATtcaaactgcattttgttttttgttttttccccccagtctCATGCTGTGTGCCAGCAAAACTTGTTCTGAAAAGCCTTCTCAGCAAAATCCGCGTACCAAAACAGATTTGCGAGTCAaatataatgtgaaaaaataatagttgGGAACAAAATGTGACACTTTGGGACAGATTGAACACTCCATCCCAGCGGCAGTGTGCACCTCCTTCCGTGACAACAATATAAACTTGTTACAAaaccttttgtgttttcatcCCCAATTCAGTTGTTTTTCATAATATGGTACAAAGTTTCAGTATGAAATTTTATTTCTCTAGTTTCTATACTACCCCTCCCCAATTTCGGGCTTTTAGAGAGAAACAACTGTGCACATTTGCTGCAGTCTGATCAAAATGTATTCCTTGTTAAAATGGTACACATACTCACTGCCTTGGTATACCCTTGTCTTTATAGCAGGCCATGTATTAAGAATGGCGAGAAGAAAACTTTAAATTTAGAGTTGAATGCTGTATATAGGTAGCCTTGAGTTTAACTCTGATAGCCTTCGGTTTAGATCTCACAGTAGTGTTTCAGTTACAGCTTTTACTTTGCATCATGGAGAGATGAGTTGTTCTTTACACAGGAGTTAAAGGGGCATTCAGCACCATGATGGAACGTGTAATAAATCTGTCCCTGTCATTTTCTAACTGAGGACACGGGCACCAAAAGacttttgtacatttgtactgTGATTAAGAGCTAAACGAGTACGTAGAACTGATAGTCTGGTTTGGGTGAGAGAGCCGTGTGCAGTGTGTAGAATTGCACTATTTCTAACTGCAGTCAGACATTTCGTGTGTAAGGTGTAATGACCTAAAATTAGGCACGTCTTACTTGAGGTTATGCAAAACCATTTTTTGCCACAAGGTGTCACTTTTGAGCGTTGGCCAcactattttttctttttttgtcgttgtttttgtttttttaatgcagtacGTTTCAcctctgtaaatatttttttgtgtaaaattTGACAAAGGTATATTTactacactgtaaatacatgtgatgatatattgtattattttgcttttttgtaaaGCAGTTAGTTGCTGTACATGTATAAcatacaaatttaattattcTAGTGGTAGTAATgataacttctctctctctccacccttTCACTGCattatgtcattaaaaaataaaaatattgagtAAAAAAcgattaaaaaatggaaaagaataTAAATTGCTGTGTATTATAAACTCACACTGTGTATGATACTTATTGTTTCCATTGGACTTCACCTTGAGAAATGTTatcttaataaatacaattttcaatcCTGTTAGTGCTGTGTGGCAGAGGTATGCCAGAAGAAAGCTAAAGAAtctgctgtttaaaaaaataagatatgtTACTCATAGACGCCATTGTAGAAATCattgttcaaaatatttgttcCCACCGCCTTCCTCTGTACCATTTCCATCCCTCTGTGTATGTATTCCTTTTTTggaagtaaaatgtaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005525 False 3633 mRNA 0.58 22 3612852 3632712
TU192393 True 6012 lncRNA 0.38 2 3606961 3612994

Neighbor

gene id symbol gene type direction distance location
AMCG00005524 NA coding downstream 2606 3583401 ~ 3604355 (-)
AMCG00005497 msi2b,LOC105028669,LOC106603292 coding downstream 38457 3566837 ~ 3568504 (-)
AMCG00005501 LOC108435815,LOC107756385,LOC107666187 coding downstream 241611 3349957 ~ 3365350 (-)
AMCG00005480 NA coding downstream 455042 3151044 ~ 3151919 (-)
AMCG00005479 NA coding downstream 601115 2992417 ~ 3005846 (-)
AMCG00005552 LOC106567758,LOC106603288 coding upstream 19923 3652635 ~ 3692107 (-)
AMCG00005561 cuedc1,LOC107682807,LOC107587359,LOC107746650,LOC107672109,LOC107757269 coding upstream 175053 3807765 ~ 3821342 (-)
AMCG00005568 NA coding upstream 371551 4004263 ~ 4019746 (-)
AMCG00005547 LOC107751257,LOC107695157,LOC107603166 coding upstream 901428 4534140 ~ 4536045 (-)
AMCG00005549 acaca coding upstream 910614 4543326 ~ 4544200 (-)
G152736 NA non-coding downstream 298530 3306686 ~ 3308431 (-)
G152665 NA non-coding downstream 405274 3201185 ~ 3201687 (-)
G152661 NA non-coding downstream 422276 3183821 ~ 3184685 (-)
G152652 NA non-coding downstream 446597 3160057 ~ 3160364 (-)
G152473 NA non-coding downstream 1161864 2415072 ~ 2445097 (-)
G152793 NA non-coding upstream 66099 3698811 ~ 3725372 (-)
G152798 NA non-coding upstream 81971 3714683 ~ 3718436 (-)
G152815 NA non-coding upstream 155496 3788208 ~ 3792444 (-)
G152853 NA non-coding upstream 357207 3989919 ~ 3993521 (-)
G152894 NA non-coding upstream 624509 4257221 ~ 4260312 (-)
G152645 NA other downstream 516247 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 716513 2872506 ~ 2890448 (-)
AMCG00005517 NA other downstream 1196714 2406525 ~ 2410247 (-)
AMCG00005532 NA other downstream 1277277 2197354 ~ 2329684 (-)
AMCG00005461 eif4h other downstream 1883461 1708683 ~ 1723500 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other upstream 217424 3850136 ~ 3869209 (-)
AMCG00005539 NA other upstream 652005 4284717 ~ 4292871 (-)
G153130 NA other upstream 1668057 5300769 ~ 5302198 (-)
G153342 NA other upstream 2448523 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 2599447 6232159 ~ 6234028 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G887274 NA non-coding NC_048574.1 CM023228.2 39671707 ~ 39676278 (+)
eurasian perch (Perca fluviatilis) G174196 NA non-coding NC_053128.1 CM020925.1 10331327 ~ 10335010 (-)
tiger barb (Puntius tetrazona) LOC122329431 palmdb,LOC107697963,LOC107712824,LOC107677254,LOC107548902,LOC107739008,LOC107697908 misc NC_056722.1 CM032091.1 517063 ~ 532695 (-)
mexican tetra (Astyanax mexicanus) G174140 NA non-coding NC_035916.1 CM008319.1 7292882 ~ 7296362 (+)