AMCG00005526


Basic Information

Item Value
gene id AMCG00005526
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3642889 ~ 3644121 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005526
ATGTCAACTCCAAAAAGGACTGAACAAACCTCCAAGGCTAAAGTGACCTTTCATCCAACCACTGTCAAACCCACCGAAACGACTCGAGAAAACGTAACGTCGGCTGCAACGCCAGCCCAAAAAGGCATTGAAGACCACCCATCGTTGCCCATCTCAAACAGCTCGTCACCTCCCACGGAACAAGCAAGCACCGCCTACACTACCACTTCTCTGACATACACAACTAAAGATCACACAAATATTACAGCTGTGCTATCTACCACAAAATCAGCACAAACTACTGAAAGAACTACTATTACTCCCGCTCCTCCGACAACCACGGCTCCAAAGCAACGGACCACCAAGCAAGAGACTTCAGCAAGCACAACTACTGCTCCTTCCACAACCACAACTGCCAAGGTGTCCACCCTGGGAACCAGTACGACTGCCAAGGAAACCATCGAGACAACCCACACCACGCCTGCAAACACAGAGAAGAGCCAAGGCGCAGGGAAAATTGTAACCATCATCATCAGCGGGGCTCTAATCTCGATGCTGATTGTAATACTCTGTATTTTGCTGCGCAAGAGGCTACAGCAGAACAGGAGGGTGGAAAACCCAGAATGGGCCGGACCCTCCCCCTTCCTGGATGGCAAATACACGGACAACCTCTCCACTGTGGATGAGGAGGAAAAGAAGCCGAGCCTCAGGTCCTCTAAGGGCATCTCGCTGGGCGGCTTTCTGCCCCAGCGCTTCTCCAaacgtctctctctcctccggGAGACGGACAAGGAGCTCATGATGGGAGACTTCCAGCAGGGAAGCACGTTCAACACGGGTGAGCCACCCAAATCTCAGAAGGGTGGTGCAGTAGAGACAGATAACAAGCAGAACAGCCCAGCCAGCTCTAATGGCCACAGCGGAGCTTCCAGCAAGGAAAGCCCACAGGATGGGATTATGACTAAGGCTACGGGAGTCAACAGCAGCTTGGGGGATCAAACCTCTGCTTCTCCAGAGCACGCTACATTACCTACTGCAGAGAACCAGGCAGCTGCGCCGTTAGTAGATATTGATCTTGGAGCAAACCCTACTGACAATGAAGCCTTGCCCCCTCCATCCCAACTAGATGAGCAGACCATTCCTGCGGCAGTCCCAGATACCCAGCCTGATTCCATCCCTGaccttccccctcccccatcaATGGATAACCAGTCtattcctcctccaccttcCCCTCCACCTCTCACCCAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005526 True 1233 mRNA 0.53 1 3642889 3644121

Neighbor

gene id symbol gene type direction distance location
AMCG00005522 NA coding upstream 5078 3633733 ~ 3637811 (+)
AMCG00005500 NA coding upstream 336045 3304889 ~ 3306844 (+)
AMCG00005499 NA coding upstream 347575 3284870 ~ 3295314 (+)
AMCG00005508 nlk,nlk2,LOC107682651,LOC107756449,LOC107666197 coding upstream 386783 3229689 ~ 3256106 (+)
AMCG00005507 nlk coding upstream 440129 3201501 ~ 3202760 (+)
AMCG00005523 NA coding downstream 4726 3648847 ~ 3652715 (+)
AMCG00005551 wsb1,LOC107756317,LOC107746651,LOC107682796,LOC107592922,LOC107587373,LOC107672108 coding downstream 62532 3706653 ~ 3722896 (+)
AMCG00005550 NA coding downstream 95287 3739408 ~ 3740831 (+)
AMCG00005558 NA coding downstream 121893 3766014 ~ 3788578 (+)
AMCG00005559 NA coding downstream 155146 3799267 ~ 3807613 (+)
G152657 NA non-coding upstream 382460 3260210 ~ 3260429 (+)
G152656 NA non-coding upstream 442702 3199332 ~ 3200187 (+)
G152655 NA non-coding upstream 455901 3183821 ~ 3186988 (+)
G152644 NA non-coding upstream 552234 3071950 ~ 3090655 (+)
G152397 NA non-coding upstream 1319544 2255365 ~ 2323345 (+)
G152764 NA non-coding downstream 79792 3723913 ~ 3761827 (+)
G152866 NA non-coding downstream 614745 4258866 ~ 4260635 (+)
G152906 NA non-coding downstream 647909 4292030 ~ 4292882 (+)
G152943 NA non-coding downstream 888200 4532321 ~ 4534824 (+)
G153080 NA non-coding downstream 1546406 5190527 ~ 5190796 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 372045 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 793281 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 1132213 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 1696089 1929455 ~ 1946800 (+)
G152337 NA other upstream 1838986 1799811 ~ 1803903 (+)
AMCG00005538 NA other downstream 638396 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 916092 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 1570692 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 2790400 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 2843597 6487718 ~ 6488782 (+)

Expression


Co-expression Network