AMCG00005529 (sebox)


Basic Information

Item Value
gene id AMCG00005529
gene name sebox
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2213213 ~ 2215285 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005529
AGCCAGAAGCGGCCAGAAGACAAGGATGTGGACATCAACTTATTTTACAAAGACAccaaaaatcaatttaaagatgcgCTGTCCGAGCCTGAAGCCCCCCTCGGCGGGGTCTCGGAGgggcagaggaagaggaagaggaccATCTTCAGCCGGGCTCAGCTGTCCGAGCTGGAGACAGCCTTCGCCGGGACCCCGTACCCCGACATCAGCCTGCGGGAGCGCCTGGCCGCCCTCACCCGCCTGCCCGAGAGCAAAATCCAGGTTTGGTTCCAGAACCGTCGAGCCAGGAGCATAAAGAGTGGCAAACTGACCCGGCCTCTGAAAAAGTCTCCGGCCAACGCTAGCGCGCCCCACCCTTCTCCCTTCGCCACCTCCTTCAGCCCCCGTGCCCTCAGGGAGGCCGGGAGCACAGGGCTGCCGGAGCAGAGCCAAGCGGAGATGAGCCACCTACCTTACGGAAACTGGGCCCGACTGAGCAGCACCCTACAGCATCCACAGCAGTACAACAGCCGACAAGATCCATCCCAAAATCCCCTGGGGCACCAGCCACAACAGCCAGCGACGCACCTCTCCCCGGACCTTCCAGACCCGCTCGCCTTGGAAGGCGCCCACCCCCAGttccccagcagcagcagcagcagcaggcagggCCAGCGCAGCCAGGTCACCCCCAGGCTTCAGTGGGACGATTTCAGCCAGTTCTGCGCCGCTTCTGCTTACCGACCCCCCAAGCCTCAGTCGGACCCCCACCAGCCCTACCACCACTCCAGGTACCCCATGGCAGACACACACCACAGTAGGGTCCCGGTTGACCAGGTCGTCCCCTCCCACCCCCAGCAGCAGCCCTACTGGGATGGCCCCCAAAGGCAGGAGTCGCATCCCAGCGCCCCGCAGACCTCACTGAGCTACATTTCTGATCTCATCTACAACGCAGCCATCGTCACCAACCTAGTGGAGTTCTGA

Function

symbol description
sebox Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within endoderm development; heart morphogenesis; and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in margin; marginal blastomere; presumptive endoderm; and shield. Orthologous to human SEBOX (SEBOX homeobox).

NR:

description
PREDICTED: homeobox protein SEBOX

GO: NA

KEGG:

id description
K24904 SEBOX; homeobox protein SEBOX

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005529 True 963 mRNA 0.63 3 2213213 2215285

Neighbor

gene id symbol gene type direction distance location
AMCG00005530 nle1,LOC107720672 coding upstream 3723 2202429 ~ 2209490 (+)
AMCG00005528 NA coding upstream 12232 2174065 ~ 2200981 (+)
AMCG00005527 pitpnab,LOC108410689,LOC105890453,LOC101470402,LOC100703534,LOC103045464 coding upstream 42584 2157962 ~ 2170629 (+)
AMCG00005455 LOC106612657 coding upstream 92339 2099044 ~ 2120874 (+)
AMCG00005456 NA coding upstream 123336 2083234 ~ 2089877 (+)
AMCG00005531 LOC108430460 coding downstream 7825 2223110 ~ 2248375 (+)
AMCG00005518 typx,nxn,LOC106612785 coding downstream 128909 2344194 ~ 2349944 (+)
AMCG00005514 nxn coding downstream 171858 2387143 ~ 2404764 (+)
AMCG00005516 NA coding downstream 193272 2408557 ~ 2409948 (+)
AMCG00005515 LOC102196260 coding downstream 195282 2410567 ~ 2415588 (+)
G152198 NA non-coding upstream 751274 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 754466 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 959254 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 1155818 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 1198833 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 40080 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 856665 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 968536 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 984047 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1044925 3260210 ~ 3260429 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 266413 1929455 ~ 1946800 (+)
G152337 NA other upstream 409310 1799811 ~ 1803903 (+)
G152267 NA other upstream 464279 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 695633 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 833911 1376468 ~ 1379302 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 288625 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 629932 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 1051089 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 2067232 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 2344928 4560213 ~ 4563020 (+)

Expression


Co-expression Network