AMCG00005538


Basic Information

Item Value
gene id AMCG00005538
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4282517 ~ 4305156 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005538
TGAGTATATAGCTGCTCTCTGGTATGGTGTGAGAGGTGAGTGCTGCTGCTAATTGAAGAACAGCTGCAGGTGACTGCGTTGATTAATCACTGAAGGTGAATGAAATTAGGGAAATCCTCTGAAGAAAGCTGCTCCTCTCTTGCAAGCTGAATCAGTCTCTCCAAATGTCTGTTGTTGTAGAGGGCAGATAGGTcatactttttatgttttgtttttaaaaactttcaTAACTGCACAGACCCAGCTTTTCCCAGCAGCTGGCCTATTATCTGATGTCTTCACTGTTAAGAGATGGTTAAATAACTGCTTCTCTTATTTGATTGCAGTATTTTGTAAACTCTCACAGTTGGCTGCTGTGTTGCATTGTCCTGCAGGCTGTGCAGTGTCTGATGATCTGAGTGCCAGTGACTCGGCAGCTGCTCCTAATTGGAGGAATACATAGTGAAACAGTAAGAACAGGAAGTCTGGATTTCCCCTTGTGGGTGTGGAGACTCTATGGCCAATAAGCAGAGCCCAAACAGGaagtttctttttcattcctaCTATCAGATCCCAAGACaccaaacacacagctgaaagaaagaaagaaaacacacgGGCTGAAAGGATGgaaatgattaatattttgCTAGTTTGGGCTGGGGTTGTGATAGGCCTGTATATGTTCATATACTATGCATTCTTTGCTGGGGCTTGGTGTAAAAGTTCGACCAGGCTGCCTGGAAAGACTGTGATCATAACAGGGGCCAACACTGGCATTGGGAAGTACACTGCTCTGAAACTGGCCAAGAGAGGGGCGAGGGTAATTCTGGCCTGTTGCAATAAGCAGAGGGGTGTGGTTGACGCTGGCAGGACTGTAGATGGCTTCGGTCTGATGTTTGGAGTCAACCACCTGGGCCACTTCTTGCTCACCTGCCTGCTGCTGGAGCGGCTGAAAGAAGGGGACCCGAGCCGTGTGGTTGACGCTGGCAGGACTGTAGATGGCTTCGGTCTGATGTTTGGAGTCAACCACCTGGGCCACTTCCTGCTCACCTGCCTGCTCCTGGACCGGCTGAAGGAAGGGGACCCGAGCCGTGTGATCAATGTGTCCTCCATGACCCATCGTTGGGGGCAGATTGACTTTGACTGCATCAACACCCACAAAGCCCTGGGGCTGGGAGACTCCTTTTCTGGGATTTTTAAGACCTACAGCCACAGCAAGCTCTGCAATGTGCTGTTCACCCATGAGCTGGCCAAGAGGCTGCAGGGCACCAACGTCACCTGCTACAGTCTGCACCCGGGGTCAGTGAAAACTGAGTTAACACGAAATGCAAGTCTTCTGGAAAATTTAATACTCAAGCTCATGGCCTGGCTGTTCTTCCTGGACACAAAGGCCGGTGCCCAGACCACCCTGCACTGTGCGCTCAAGAAGGGCATCGAGCCGCTCAGCGGGCAATACTTCTCCTGCTGCGCTGTGGAGGAGGTGGACGCCAAGGCCCGGGACGACGCCGTGGCCAAGAAGCTGTGGGAGGTCAGGGCCGCAATGTGGGCTGCGGTGGCTGCGGTGGCGGCGCTGATTGCGGGAGCCTATGCGCTCCTGCAAAACACCCTCTTCAAAAGGGCGAGATGTGCCAGCAATGCTGACATGACTGGAAAGACGGCGATTATAACCGGGGGCAACACCGGCATCGGCAAGGCCACGGCGCTGGAGCTGGCCAGGAGAGGGGCGAGGGTCATTCTCGCCTGCCGCAACAAGCAGAGGGCCGAGGCCGCGGTCCACGACATCAGGAGGGACTGGTGGCAGACGGGAGGACGGAGGATGGCTTCGGGATTGAGTTTGGCGTCAATCACCTGGAAGGCGGAGCGAGCCGGGTGGTCACTCTGTCCTCCCTGGCCCATATCTGGGGCAGGATCGACTTTGACAACCTCAACAGCAAAAGGGACCTTGGCACGGGCAAAGGAAGGTGCCCAGACCACCCTGCACTGTGCACTGCAGGAGAGCATCGAGCCGCTCAGCGGGCGCTACTTCTCCTGCTGCGCCGTGCAGGAGGTGGGAGCCAAGGCCCGGGACGACGCCGTGGCCAAGAAGCTGTGGGAGTGCAAGGGCAAGCTGCTGCTGGTGTCGGATGAAACTTGGTGTTGGGATGTGCTCCGAGGAAAGAAGACGCCTTCGCGAGGAAGCGACGGGAGAAGTGGCGCAAGTGAGCAGCTGGAGTCTCGGAGCTGCATTTACACCAAGTTTGCATCGGACGGAGCCATGGCGGACTTGCTCACCGGCTTGACGGTGCTCATCCTggtttatgtattgatttactaCACTCTGATCAAAGGCTCTGTGTGGGGCAACACCGGCATCGGCAAAGCCACGGCGCTGGATCTGGCCAGGAGAGGGGCGAGGGTCATTCTCGCCTGCCGCAACAAGCAGAGGGCCGAGGCCGCGGTCCACGACATCAGGAGGGTTAACTCACGCCCTGCTGTGCGTTGCTCCTCAGGGTTGATTGGCCCAGGCAGGACCGCAGATGGTTTTGGCATGATTTTTGGGGTGAATCACTTGGGCCACTTCCTGCTGACCTGCCTCCTGCTGGAGCGGCTGAAGGAGGGGGGTGCCAGCCGCGTGGTCAACGTGTCTGCACTGGCCCATCGCAGGGGCACCGTGGACTTCGGCATCCTCAGCTCCCACAAGGACCTGGTGACCGGCCAGTCCACCTTGCAGAATATCCAGGCCTACTGCAGCAGCAAGCTGTGCAATGTGCTCTTCACCCGGGAGCTGGCCAACCGCCTGGAGGGCACCAACGccacctgcttcagtctgcaccCAGGAGTGATCCAGACCGAGATAGGCCGCCATTTGAGCCTCTGGCAGAAGATTGTCACCATCCCCATCGCCAAACTGTTCTTCCTGGACGCGGAGGCCGGCGCTCAGACCACCCTGCACTGCGCGCTGCAGGAGGGCATCGAGCCGCTCAGCGGGCGCTACTTCTCCAATTGCGCTGTGCAGGAGGTGGGAGCCAAGGCCCGGGACGACGCCGTGGCCAAGAAGCTGTGGGAGGTCAGTGAGAGGCTGACCGGCCTGGcctgagcagagagagagggagagagggagagagagacaccaggGCTGTGGAGAGGAGCTGGCGCACCCTGCCACCGCTGTCCGGAGCGCCACAGGGCTGGGGTTCAGGGCGACCCAAGCTCTTAACAACTTGTTTATCTATGTGTAAAAGACTCGCATATTATGGAGATGTTTATGtactattttgtttaataataaataatcaataataataaatacattcatattaaacACTACCAATTCCTACACATAGTAGGGACTGACAGTGTCCCGTGACCTGGCCAAGACACAAGAATCGCATTAAGAATAGACGAGCTGCCTTCTTCAATCTATAAGACCTCCGCAGCGTCTGCAAAGACAGCATCTGTCCTGCACACCGAATGACTTCTAGACCCAGTAATAAACTCTGGGTGATTGAAAAGCGAAGTGTGCCACCATTGCTTCTGTTCAGATCGGCTTTGTCTGTGTGGTCCTTGTATGGAGTTTTTGTTACTGAACTGTGTGTCTAAATGTCTGTCAAACGATGGCCTCGGCTCAGAGGCGTGGAGACGGGGCCCCCGTGTGCCTTTGAAATAAAGAA
>TU192563
TATCAGATCCCAAGACaccaaacacacagctgaaagaaagaaagaaaacacacgGGCTGAAAGGATGgaaatgattaatattttgCTAGTTTGGGCTGGGGTTGTGATAGGCCTGTATATGTTCATATACTATGCATTCTTTGCTGGGGCTTGGTGTAAAAGTTCGACCAGGCTGCCTGGAAAGACTGTGATCATAACAGGGGCCAACACTGGCATTGGGAAGTACACTGCTCTGAAACTGGCCAAGAGAGGGGCGAGGGTAATTCTGGCCTGTTGCAATAAGCAGAGGGGTGAGGCAGCAGTTGAAGACATCAAGCGGGACAGTGGCAGCAGTGCGGTGGTGTTCATGCAGCTGGACCTGGCCAGCCTGCAGTCCGTGCGCTCGTTCGCTGAGAAGTTCCTGAAGACCGAGCCCCGGCTGGACCTGCTCATCAATAACGCAGGTGTGGTTGACGCTGGCAGGACTGTAGATGGCTTCGGTCTGATGTTTGGAGTCAACCACCTGGGCCACTTCTTGCTCACCTGCCTGCTGCTGGAGCGGCTGAAAGAAGGGGACCCGAGCCGTGTGATCAATGTGTCCTCAATAGCCCATTGTTCCGGGCAGATTGACTTTGACTGCATCAACACCCACAAAGACCTGGGGCTGGNNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005538 True 3632 mRNA 0.55 15 4282517 4305156
TU192563 False 650 TUCP 0.53 4 4283060 4284963

Neighbor

gene id symbol gene type direction distance location
AMCG00005534 phf12 coding upstream 2072 4264415 ~ 4280445 (+)
AMCG00005536 NA coding upstream 31669 4240208 ~ 4250848 (+)
AMCG00005535 LOC107690431,LOC107592631,LOC107743685 coding upstream 54827 4219881 ~ 4227690 (+)
AMCG00005567 LOC107718289,LOC105897181 coding upstream 289238 3918356 ~ 3993279 (+)
AMCG00005556 LOC107690467,LOC107718289,LOC107664918,LOC107743726,LOC108425789,LOC107585604 coding upstream 392856 3886333 ~ 3889661 (+)
AMCG00005537 NA coding downstream 469 4305625 ~ 4310148 (+)
AMCG00005544 lhx1a,LOC105897175,LOC105023804,LOC106613102,LOC106581220,LOC107685180 coding downstream 174290 4479446 ~ 4490819 (+)
AMCG00005545 LOC103910010 coding downstream 190452 4495608 ~ 4520105 (+)
AMCG00005553 NA coding downstream 299720 4604876 ~ 4615951 (+)
AMCG00005554 NA coding downstream 320957 4626113 ~ 4635255 (+)
G152866 NA non-coding upstream 21882 4258866 ~ 4260635 (+)
G152764 NA non-coding upstream 520690 3723913 ~ 3761827 (+)
G152657 NA non-coding upstream 1022088 3260210 ~ 3260429 (+)
G152656 NA non-coding upstream 1082330 3199332 ~ 3200187 (+)
G152655 NA non-coding upstream 1095529 3183821 ~ 3186988 (+)
G152943 NA non-coding downstream 227165 4532321 ~ 4534824 (+)
G153080 NA non-coding downstream 885371 5190527 ~ 5190796 (+)
G153082 NA non-coding downstream 890632 5195788 ~ 5201535 (+)
G153113 NA non-coding downstream 1002789 5307945 ~ 5309091 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding downstream 1015904 5321060 ~ 5323923 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 1011673 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 1432909 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 1771841 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 2335717 1929455 ~ 1946800 (+)
G152337 NA other upstream 2478614 1799811 ~ 1803903 (+)
AMCG00005546 acaca,LOC107691719 other downstream 255057 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 909657 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 2129365 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 2182562 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 2303487 6608643 ~ 6662480 (+)

Expression


Co-expression Network