AMCG00005543


Basic Information

Item Value
gene id AMCG00005543
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4749079 ~ 4750970 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005543
ATGTTCAACGCACTGTGGGCAGTTAAGTCAGAGGCATGGTGCTGCCACAGCCTTGTAATCCCAGGAGAGCggcaagaggagagagaaaccgCATGGATAGAAATAAAGTCTTCCATCCGGACGGACACCCTCACTCAGAGCCCTGCTGTGAAGTGCAAGTGCCTGCACCGCTCAGACAACTCGGCCTATCTCTGCCTGGAGATAAGAGCGTCGCTGCCAAACGCTGATCAAAGGCAACCTCGCGGAGGCTTCGATACGAGACGAGTCTTCCACTCCAACCCCAAGTACACTCTGAACCCGCCGCAGCTGCAGAGGGAAGGAAGCATCGAGACGCTCAGCAACAGCTCCGGCTCCACCAGCGGAAGCATAACTCGCAATTTTGAGGGTTACCGTTCGCCGCTCCCCACCAATGAGAACCAGCCCCTCAGCCTGTTCCCCACGGGATTCCCTTAA

Function

GO: NA

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005543 True 453 mRNA 0.57 3 4749079 4750970

Neighbor

gene id symbol gene type direction distance location
AMCG00005540 tbx2,tbx2b,LOC107685069 coding downstream 18627 4718184 ~ 4730452 (-)
AMCG00005541 NA coding downstream 52964 4678650 ~ 4696115 (-)
AMCG00005555 acaca coding downstream 152597 4560933 ~ 4596482 (-)
AMCG00005548 NA coding downstream 197420 4547077 ~ 4551659 (-)
AMCG00005549 acaca coding downstream 204879 4543326 ~ 4544200 (-)
AMCG00005542 NA coding upstream 11597 4762567 ~ 4763161 (-)
AMCG00005564 bcas3,LOC107743646,LOC107664928,LOC107757056 coding upstream 127045 4878015 ~ 4921691 (-)
AMCG00005566 NA coding upstream 181954 4932924 ~ 4935507 (-)
AMCG00005563 bcas3,LOC107685068,LOC107562951,LOC107743646,LOC107664928 coding upstream 187181 4938151 ~ 4943348 (-)
AMCG00005565 NA coding upstream 204076 4955046 ~ 4966536 (-)
G152942 NA non-coding downstream 217347 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 448681 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 488767 4257221 ~ 4260312 (-)
G152853 NA non-coding downstream 755558 3989919 ~ 3993521 (-)
G152815 NA non-coding downstream 956635 3788208 ~ 3792444 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding upstream 600383 5351353 ~ 5352345 (-)
G153143 NA non-coding upstream 602383 5353353 ~ 5355697 (-)
G153178 NA non-coding upstream 736339 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 897388 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 990522 5741492 ~ 5748572 (-)
AMCG00005539 NA other downstream 456208 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 879870 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 1116367 3606961 ~ 3632712 (-)
G152645 NA other downstream 1658365 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 1858631 2872506 ~ 2890448 (-)
G153130 NA other upstream 549799 5300769 ~ 5302198 (-)
G153342 NA other upstream 1330265 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 1481189 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1739285 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 2358248 7109218 ~ 7145807 (-)

Expression


Co-expression Network