AMCG00005546 (acaca,LOC107691719)


Basic Information

Item Value
gene id AMCG00005546
gene name acaca,LOC107691719
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4560213 ~ 4563020 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005546
ATGGTGGCCTGGCGCATGACCCTGAAGACCCCGGAGTACCCCGCGGGGCGTGACATCATCGTGATCAGCAATGACATCACCCACAAGATCGGCTCGTTCGGGCCGCAGGAGGACGTCCTGTTCCAGCAGGCGTCGGAGCTCTCCCGGGACGAGGGCATCCCACGCATCTACATCGCGGCCAACAGCGGGGCGCGCATCGGCCTGGCGGAGGAGATCCGGCACATGTTCCACGTGGCCTGGCAGGACCCCGCCGACCCCTACAAGGCGAGTTGCCTCCTGCTGAGAAAACATTCGGGATTCGGGTTATCTGAGCATGAAATTAAGGCGAATTCGCCGGCAGAAGGCTCCAATCAGCAGTTTGACTCGCAGCCCCCAGCGCTCAAGTTTTTACATTACTGGGGGGCGGCAGTGAAAACTAAACCTGGACCAGCGCAGATAGCAGAAACAGGTGAAAGATCAAAAGAAATAAACCGTGAGTGGGGGTTCAAGTACCTGTACCTCACGCCCCAGGATTATAAGAAGGTGTCGGCTCTGAACTCTGTGCACTGCGAGCACGTGGAGGATGAGGGCGAATCCAGGTACAAAATCACAGACATTATCGGGAAGGAGGAAGGCCTGGGCGTGGAGAACCTGCGCGGCTCTGGGATGATCGCCGGGGAGTCTTCGCTGGCCTACGAGAAGGTCATCACCATGAACCTGGTGACTTGTCGTGCAATCGGGATCGGGGCGTACCTGGTGAGACTTGGCCAGAGGACCATCCAGGTGGAGAATTCTCACATCATCCTGACCGGAGCTGGGGCCCTCAACAAGAActga
>TU192612
AGATCGGCATGGTGGCCTGGCGCATGACCCTGAAGACCCCGGAGTACCCCGCGGGGCGTGACATCATCGTGATCAGCAATGACATCACCCACAAGATCGGCTCGTTCGGGCCGCAGGAGGACGTCCTGTTCCAGCAGGCGTCGGAGCTCTCCCGGGACGAGGGCATCCCACGCATCTACATCGCGGCCAACAGCGGGGCGCGCATCGGCCTGGCGGAGGAGATCCGGCACATGTTCCACGTGGCCTGGCAGGACCCCGCCGACCCCTACAAGGGGTTCAAGTACCTGTACCTCACGCCCCAGGATTATAAGAAGGTGTCGGCTCTGAACTCTGTGCACTGCGAGCACGTGGAGGATGAGGGCGAATCCAGGTACAAAATCACAGACATTATCGGGAAGGAGGAAGGCCTGGGCGTGGAGAACCTGCGCGGCTCTGGGATGATCGCCGGGGAGTCTTCGCTGGCCTACGAGAAGGTCATCACCATGAACCTGGTGACTTGTCGTGCAATCGGGATCGGGGCGTACCTGGTGAGACTTGGCCAGAGGACCATCCAGGTGGAGAATTCTCACATCATCCTGACCGGAGCTGGGGCCCTCAACAAGGT

Function

symbol description
acaca Predicted to enable ATP binding activity; acetyl-CoA carboxylase activity; and metal ion binding activity. Acts upstream of or within response to (R)-carnitine. Is expressed in liver and male organism. Orthologous to human ACACA (acetyl-CoA carboxylase alpha).

NR:

description
PREDICTED: acetyl-CoA carboxylase 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005546 True 816 mRNA 0.58 7 4560221 4563020
TU192612 False 604 TUCP 0.62 4 4560213 4561484

Neighbor

gene id symbol gene type direction distance location
AMCG00005545 LOC103910010 coding upstream 40108 4495608 ~ 4520105 (+)
AMCG00005544 lhx1a,LOC105897175,LOC105023804,LOC106613102,LOC106581220,LOC107685180 coding upstream 69394 4479446 ~ 4490819 (+)
AMCG00005537 NA coding upstream 250065 4305625 ~ 4310148 (+)
AMCG00005534 phf12 coding upstream 279768 4264415 ~ 4280445 (+)
AMCG00005536 NA coding upstream 309365 4240208 ~ 4250848 (+)
AMCG00005553 NA coding downstream 41856 4604876 ~ 4615951 (+)
AMCG00005554 NA coding downstream 63093 4626113 ~ 4635255 (+)
AMCG00005577 appbp2 coding downstream 421210 4984230 ~ 5000598 (+)
AMCG00005580 usp32,LOC107585566,LOC108425843 coding downstream 459251 5022271 ~ 5067746 (+)
AMCG00005578 NA coding downstream 509106 5072126 ~ 5079503 (+)
G152943 NA non-coding upstream 25389 4532321 ~ 4534824 (+)
G152906 NA non-coding upstream 267331 4292030 ~ 4292882 (+)
G152866 NA non-coding upstream 299578 4258866 ~ 4260635 (+)
G152764 NA non-coding upstream 798386 3723913 ~ 3761827 (+)
G152657 NA non-coding upstream 1299784 3260210 ~ 3260429 (+)
G153080 NA non-coding downstream 627507 5190527 ~ 5190796 (+)
G153082 NA non-coding downstream 632768 5195788 ~ 5201535 (+)
G153113 NA non-coding downstream 744925 5307945 ~ 5309091 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding downstream 758040 5321060 ~ 5323923 (+)
G153154 LOC106602867,LOC107597455 non-coding downstream 881359 5444379 ~ 5445257 (+)
AMCG00005538 NA other upstream 255057 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 1289369 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 1710605 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 2049537 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 2613413 1929455 ~ 1946800 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 651793 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 1871501 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 1924698 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 2045623 6608643 ~ 6662480 (+)
G153675 NA other downstream 2697657 7260677 ~ 7265971 (+)

Expression


Co-expression Network