AMCG00005547 (LOC107751257,LOC107695157,LOC107603166)


Basic Information

Item Value
gene id AMCG00005547
gene name LOC107751257,LOC107695157,LOC107603166
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4534140 ~ 4536045 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005547
ATGCGTGTTTCCTCGGCCCGGCTCTACAGCGGCTCTCGGCAGCTCTCCCCGAGGACAGGGCTGTTAAAGACACTTCAGACCGGACAGAACCCGGCCTACCTGTGGGACAGCAACGAAGACGTGGTGGAGTGGCTGGAGAGGCAGCtggcggaggaggagggggcgcGCTCCGTCATCGATGAGAACATCAAGTACATCCGCCGGGACCACATCCTCAAGCAGATCCGCAGCCTGGTCCAGGCCAACCCCGAGGTGGCCATGGACTCCATCGTGCACATGACGCAGCACATCTCCCCCACGCAGCGGACCGAGGTGATAAGAGCCGACATTCGTACCCCGCGCGTGGCAGTTCAGGTTAAAGCCCGTCTGAGAGGAGCACGGAGGATGGCCGTCCCCTCCTCTCTGAGTACGGCTGTAAATCCCCGAAGCAGCTCAGCCAGCGGACCCCCCACTGCCGCCAGCACGGGGAGGCTAAGTGGCAGTGTGTCCAAGCGGCGTCCCCAAGCACCGGGACATTAA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: acetyl-CoA carboxylase-like

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003989 acetyl-CoA carboxylase activity molecular_function
GO:0004075 biotin carboxylase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005547 True 519 mRNA 0.63 5 4534140 4536045

Neighbor

gene id symbol gene type direction distance location
AMCG00005568 NA coding downstream 514394 4004263 ~ 4019746 (-)
AMCG00005561 cuedc1,LOC107682807,LOC107587359,LOC107746650,LOC107672109,LOC107757269 coding downstream 712798 3807765 ~ 3821342 (-)
AMCG00005552 LOC106567758,LOC106603288 coding downstream 842033 3652635 ~ 3692107 (-)
AMCG00005524 NA coding downstream 929785 3583401 ~ 3604355 (-)
AMCG00005497 msi2b,LOC105028669,LOC106603292 coding downstream 965636 3566837 ~ 3568504 (-)
AMCG00005549 acaca coding upstream 7281 4543326 ~ 4544200 (-)
AMCG00005548 NA coding upstream 11032 4547077 ~ 4551659 (-)
AMCG00005555 acaca coding upstream 24888 4560933 ~ 4596482 (-)
AMCG00005541 NA coding upstream 142605 4678650 ~ 4696115 (-)
AMCG00005540 tbx2,tbx2b,LOC107685069 coding upstream 182139 4718184 ~ 4730452 (-)
G152942 NA non-coding downstream 2408 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 233742 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 273828 4257221 ~ 4260312 (-)
G152853 NA non-coding downstream 540619 3989919 ~ 3993521 (-)
G152815 NA non-coding downstream 741696 3788208 ~ 3792444 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding upstream 815308 5351353 ~ 5352345 (-)
G153143 NA non-coding upstream 817308 5353353 ~ 5355697 (-)
G153178 NA non-coding upstream 951264 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 1112313 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 1205447 5741492 ~ 5748572 (-)
AMCG00005539 NA other downstream 241269 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 664931 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 901428 3606961 ~ 3632712 (-)
G152645 NA other downstream 1443426 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 1643692 2872506 ~ 2890448 (-)
G153130 NA other upstream 764724 5300769 ~ 5302198 (-)
G153342 NA other upstream 1545190 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 1696114 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1954210 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 2573173 7109218 ~ 7145807 (-)

Expression


Co-expression Network