AMCG00005548


Basic Information

Item Value
gene id AMCG00005548
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4547077 ~ 4551659 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005548
ATGGAGTGGGTGTCTGTGGTGGAGGTGCTGGGCCGGGAAGTGTACACCTCCAACAACCAGCTGGGGGGAGTACAGATCATGCACAACAACGGTGTGACGCACAGCACGGTCTGTGACGATTTCGAGGGTGTCTACACGCTGCTGCAGTGGCTGTCCTACATGCCAAAGTGCAACTCCAGTCCCGTGCCCATCCTGAACGCCAAGGACCCCATCGACCGGCCGGTGGAGTTTGTCCCCACCAAGGCGCCCTACGACCCGCGCTGGATGCTGGCCGGCCGCCCTAGCCAGAGTCCTAAGGGCCCGTGGATCAGCGGCTTCTTCGACCACGGCTCCTTCCTAGAGATCATGCAGCCCTGGGCCCAGAGTGTGGTGGTGGGCAGAGCCAGGCTGGGTGGGATACCCACTGGAGTGGTGGCTGTGGAAACCAGGTCTGTGGAGCTGTCGGTGCCAGCGGACCCAGCCAACCTGGACTCTGAGGCCAAGATCATCCAACAGGCCGGCCAGGTGTGGTTCCCCGACTCGGCCTTCAAGACGGCCCAAGCCATCAAAGACCTGAACCGCGAGGGGCTGCCGCTCATGGTCTTCGCCAACTGGAGGGGCTTCTCTGGGGGCATGAAAGGTCAGCATCCCGAGCCGCCCACATGTTCCCTGCCTGCATGCGCTTCCTTCCTCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005548 True 675 mRNA 0.63 6 4547077 4551659

Neighbor

gene id symbol gene type direction distance location
AMCG00005549 acaca coding downstream 2877 4543326 ~ 4544200 (-)
AMCG00005547 LOC107751257,LOC107695157,LOC107603166 coding downstream 11032 4534140 ~ 4536045 (-)
AMCG00005568 NA coding downstream 527331 4004263 ~ 4019746 (-)
AMCG00005561 cuedc1,LOC107682807,LOC107587359,LOC107746650,LOC107672109,LOC107757269 coding downstream 725735 3807765 ~ 3821342 (-)
AMCG00005552 LOC106567758,LOC106603288 coding downstream 854970 3652635 ~ 3692107 (-)
AMCG00005555 acaca coding upstream 9274 4560933 ~ 4596482 (-)
AMCG00005541 NA coding upstream 126991 4678650 ~ 4696115 (-)
AMCG00005540 tbx2,tbx2b,LOC107685069 coding upstream 166525 4718184 ~ 4730452 (-)
AMCG00005543 NA coding upstream 197420 4749079 ~ 4750970 (-)
AMCG00005542 NA coding upstream 210908 4762567 ~ 4763161 (-)
G152942 NA non-coding downstream 15345 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 246679 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 286765 4257221 ~ 4260312 (-)
G152853 NA non-coding downstream 553556 3989919 ~ 3993521 (-)
G152815 NA non-coding downstream 754633 3788208 ~ 3792444 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding upstream 799694 5351353 ~ 5352345 (-)
G153143 NA non-coding upstream 801694 5353353 ~ 5355697 (-)
G153178 NA non-coding upstream 935650 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 1096699 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 1189833 5741492 ~ 5748572 (-)
AMCG00005539 NA other downstream 254206 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 677868 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 914365 3606961 ~ 3632712 (-)
G152645 NA other downstream 1456363 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 1656629 2872506 ~ 2890448 (-)
G153130 NA other upstream 749110 5300769 ~ 5302198 (-)
G153342 NA other upstream 1529576 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 1680500 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1938596 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 2557559 7109218 ~ 7145807 (-)

Expression


Co-expression Network