AMCG00005549 (acaca)


Basic Information

Item Value
gene id AMCG00005549
gene name acaca
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4543326 ~ 4544200 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005549
ATGTACGACCAGGTGCTGAAGTTTGGGGCCTACATCGTGGACGGCCTGCGGGAGTACCATCAGCCGGTGCTGGTGTACATCCCGCCCCAGGCCGAGCTGAGAGGTGGGTCCTGGGTGGTCATCGACCCCACCATCAACCCCCGGCACATGGAGATGTACGCGGACAAGGACAGCCGTGGGGGGGTGTTGGAGCCTGAGGGCACAGTGGAGATCAAGTTTCGGAAGAAGGACCTGGTGAAGACCATGAGACGAGTGGACCCGATCTACATGAGTCTGGCCGAGCGTCTGGCGTGCTGTCAGTACGACCTCACAGGGCAGCTGAGTGGGCTGCAGGCACAGTGGCGCCTTCATTACCACTGCGGCCCGTTTTAg

Function

symbol description
acaca Predicted to enable ATP binding activity; acetyl-CoA carboxylase activity; and metal ion binding activity. Acts upstream of or within response to (R)-carnitine. Is expressed in liver and male organism. Orthologous to human ACACA (acetyl-CoA carboxylase alpha).

NR:

description
PREDICTED: acetyl-CoA carboxylase 1 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005549 True 372 mRNA 0.62 3 4543326 4544200

Neighbor

gene id symbol gene type direction distance location
AMCG00005547 LOC107751257,LOC107695157,LOC107603166 coding downstream 7281 4534140 ~ 4536045 (-)
AMCG00005568 NA coding downstream 523580 4004263 ~ 4019746 (-)
AMCG00005561 cuedc1,LOC107682807,LOC107587359,LOC107746650,LOC107672109,LOC107757269 coding downstream 721984 3807765 ~ 3821342 (-)
AMCG00005552 LOC106567758,LOC106603288 coding downstream 851219 3652635 ~ 3692107 (-)
AMCG00005524 NA coding downstream 938971 3583401 ~ 3604355 (-)
AMCG00005548 NA coding upstream 2877 4547077 ~ 4551659 (-)
AMCG00005555 acaca coding upstream 16733 4560933 ~ 4596482 (-)
AMCG00005541 NA coding upstream 134450 4678650 ~ 4696115 (-)
AMCG00005540 tbx2,tbx2b,LOC107685069 coding upstream 173984 4718184 ~ 4730452 (-)
AMCG00005543 NA coding upstream 204879 4749079 ~ 4750970 (-)
G152942 NA non-coding downstream 11594 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 242928 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 283014 4257221 ~ 4260312 (-)
G152853 NA non-coding downstream 549805 3989919 ~ 3993521 (-)
G152815 NA non-coding downstream 750882 3788208 ~ 3792444 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding upstream 807153 5351353 ~ 5352345 (-)
G153143 NA non-coding upstream 809153 5353353 ~ 5355697 (-)
G153178 NA non-coding upstream 943109 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 1104158 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 1197292 5741492 ~ 5748572 (-)
AMCG00005539 NA other downstream 250455 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 674117 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 910614 3606961 ~ 3632712 (-)
G152645 NA other downstream 1452612 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 1652878 2872506 ~ 2890448 (-)
G153130 NA other upstream 756569 5300769 ~ 5302198 (-)
G153342 NA other upstream 1537035 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 1687959 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1946055 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 2565018 7109218 ~ 7145807 (-)

Expression


Co-expression Network