AMCG00005562


Basic Information

Item Value
gene id AMCG00005562
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4968486 ~ 4983410 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005562
TACAAAGCGtcgaaaataaacaaaagactaAGAGGGGGAGGCTGGTCATTGAGCCGCTGGAAACTTGGCAAAATAAACTGGGATCCCAGTCCGAGAGACCACAGAGCCGCCGGGATAAACAGACGGAGCTGCTGCGGTAATGGAACAGCTATTCTCGCTGCGAGTGAGCGTCTTCTCCGACCAAGGAGGCAGGAAATACATGGAGGATGTAACCGAGGTGGTGCTGGAGCCCGAGCCGGGGGAGGACGAGCTGGATTCGGTCGGACACGGGGAGACAAAAGAGGACACGGGCGAGCAGGAGGATGGCACCGCGGGGAGAGGTCTCCAGGAGCAGGCGGCCACCAATGGCATCAGCGGCCCTTTCTCCACGACTGGGAGTGCCGGTGTGACATGGACACACAGCGCTGCCACCGAGGAGCCCCAAAGTTTCGGGCAGGACGGGGACACGCACACAGCCGAGTCTCGTCCCCGGAGGTCTGTGGCTTTCTTCGCGGTGTTTGATGGGCACGGGGGTCGGGAAGCCGCACAGTTCGCCCGGGATCATCTGTGGGATTTTATAAAGAAGCAGCGAGGCTTCTGGTCCAAGGATGACGAGGAAGTGTGCGCGGCGATACGGAAAGGGTTCGTGGCTTGCCACCACGCCATGTGGAAGAAACTGCCGGAGTGGCCCAAGACCCTGACCGGCCTTCCCAGCACATCGGGCACCACGGCGAGTGTGGTGGTGATCCGGGGGGACCGGATGTTCGTGGCGCATGTCGGTGATTCTGGGGTGGTGCTGGGGGTGCAGGAGCCCTTTGACCAATACGTTCGTGCGGTCGAGGTCACGCAGGATCACAAGCCTGAGCTGCCCAGGGAGAAGAAGCGCATAGAGGGCCTTGGTGGCAGCGTGATCAAGAAGTCAGGGGTGAACCGCGTGGTGTGGAAGCGGCCCCGTCTGACCCACAACGGGCCGGTGCGGAGGAGCACGGTCATCGACCAGATCCCCTTTCTCGCTGTGGCACGCGCTCTGGGCGACCTGTGGAGCTATGATTTCTACAGTGGAGAGTTTGTGGTGTCGCCTGAACCAGACACCAGTGTGCTGACCCTTGACCCCCGGAGGCACCGCTTCATCATCCTGGGCAGCGACGGGCTGTGGAACATGGTGCCACCCCAGGATGCTGTGTCCATGTGCCAGGACAATGAAGAAGGCCCGGTGCATTGTGGGGCGTCCAGTGCCCACCAGCTGGTGAGCCACGCCCTCCTGCGGTGGAGGCAGCGCATGCTCCGTGCCGACAACACCAGCGCCATCGTCATCTCGCTGCAGGAGCCGGGCAGCGTGGGGGGGCCTCTGCACCACGAGGAGCTGCTGCTCAACCTGGCTGAGGGGTCGCACTGCCCTCATGGCTTGGGCTCCCGCGCCAACACACCCCTCATCAAGATGTCCCACATCGAGGTGCCCCTGGCTCCCTCCTCCCCCTGCGAAAAGCTGCCCCCTCTTGAGCGAAGGAACGGCTTCTCGGGGATGGGCCTGGTCTCGCTGTCCGAGCcactgtgcgtctgtctgtccgAAGCCGTGGGCGTGGCAGCGGCGGCGGAAGCCGTGTCTCGGAGCGGCGGAGCCCTGAGCCTGATGGCCAACGAGGGGACTGCTAGCCTGCCGGTCTGCAAACGGACCCTGGAGGACCCTGGCTCGGGCCCCACCGGCAAGAAGCTGCGGCGCAACCTCTCGCGCTCCCCCCACTGCCCCCTCTCTGCCAGCGCCCCCAAACGCAAGAACACTGAGCGCCTGGCCATGCGCCGCAGCCTGAGGGGACAGAAACAGACTCCGAGTGTCCCTGCCCTGCTCCACCAGCACCGCAAGGccaccgtgtgtgtgtgctgagcCCGGGCCTGGAGCGGACACGCACACGCTCCGGCCCGCAGGTGCCACTGAGAGACATTGCTCAGGATATCCAGAGCAACAAAGCAGTTCTGATTTAATAACCCCTTTTCACTTCCTTTTGTTACAGTGTATGATTTTGTATATTccaaaatgtatacacatgCCAAGATGGTATACGGCCTATCCATTTGGGGTGCATGTATACTAGATAAACAGGGGAACGGAGGgagacaattattttaatgttggaAACCTGTCGTGTACATCTAGCTGTGGGTATGAATTTCATTGTAGTCTTTTGAAAACACGGACCTGGTAACGTCTCTTACGCGGTGTATCCTTTTgggtttggtttttatttctttgaatATTAAATGTGTGCCGTAACCGCTAAGTCATTCAACCACTTGTAAATATGACGCAAGaagatattacatttgtataaaaaaaaaaaaatagggagTGGGGAGAGGACAACTGAATCTGATTACTACATTGAGCAgagcaatatatataaatatatttttatacatggttatattttaatattttaaaaccataaagGATACACCACTCAAACTCtggattaaacaaataagtaattaCAGGATCATTAACTTAATCTTCACTCCATTCGTACTTGGGTCCCAGTCCTGGATAGATTATGCATTCTGGTTTTTGAAgtgtatatagttatatataatgttcatgttgttttattgtattttatttttattttcattagggATGTTGACCACACCCCCTAAAACTGATGGTGCTGCTATATTTTACCAGTgagaattgaaataaatgttttgtgatgCTGAGGAGAACCCTCTCGATCATGTATACAAGGACATCATGCTCTGAGCGCCAGATCAGAGACTCTTGTGCAATTTGAATAAGCTCAAACGCTGCTCTCTGGTAACACTACCCTACCGAGATAAACCAGCTATGACCGGTCTACTGCTTCATAGTGTGGGAGGTGTGTTGTCAGTGAGGATGTAACCTAGCACGTGAAAAGACAAAGAGAGGGAAAATTAATAAACCCCCTAATAGTCTGGGGAAGAGTGTGTAAGAGGTTTCTCTGCATTGCCATCCTTTCTTGGTGGATTAAAACCAAACGAAAGCATAGGAAGTGACTGATTTTAAATAGCCAGCCTTTTAAAAACGCTACACTATGAATGCAGGGCAGCAAATCGCTCGCGTTCTGCCCTTTCCAAACGCATTGCAAGACTCCCAACAATTCAGGGAGCTGTGTTTGGTAATTGCCTAAATGCACTTTCTGCACcactttctctcctctctcccggCTGATGCAGAAAGTGCATTGTTTGAGAACCCTCTGTCCGCAGCTGCCGTCCAGCCACGCCAGCCCCCGCAGGAGCTCTCCACAGCCCCCTGCTCGCTCTCCAGCGCTCACTTTATTCTCCCCCCGTCTCGATCTTGGGTTTCATGTAAATGGAGTTTAAAATGgccagttgtgtgtgtgtttcaattaACCCCTATTGCCTCGAGAGCATTATTCCCTAACATTGAATGAATGAGACTGTGACAATCTTGtgagaacaaattaaaagaaacctAAAAAAACGGGCAGTGGATATCAGTTTGCCTTTTACACTTGAACCATTTTCTTTTGGCCATCCCCACATGATTGGCTGAAGGCTTGGTTGCTGGGAGAGTTCTCGGCATAGCATACACCCCATCAATCGGTGTGTTCATGCTCCACAAGCTGAAATGTTCAATCCGCGGACAAACCCCCTCGCACCTCTGTGTTTCAGATGCTGAGATTCAGTATCGAAGCTTAAAACACGCCGCCTCATGCTGCTGCTCTGAAAGTGCTGGTTATTGTGAAGTGCACACAGAGTGTAGAAGGGCCCAGTGTGTTACTGAACCTAGGAACATAAAATGACATCGCAATCACCCTGAATCCAAACGCACATCTGGGCTGCAGGATAATACTGCTGTCTGCTGATTTTATCTGACTTTCTCAGAGTGACTCTTACAACTGTAGGGTCTACATTCAATACATCAGTCTTGGTAACACttggaagaaatacaaaagtCTTTCTTGCGTGTTAAATGAAAACTCCACCTTGTATTGTGTAAAAACCACATGTTaggttgctgttttttgttggtaGATAAatgctctttttcttttcttgttttacttgGACATGTAATAACATTTGACATCAAGACCTGTATAGATGGACCATTACACTATACATGTGTACACATTCAGGTCCTTGGTGTGAGGGCACACACTATTCTGTGTCTGGAGCTGTAAGCTTTTATGTATTCTGTGGCTGCATTGGTGAATTACCTCTGAGATGCTTGATTTAGTTCGTTTAGCTAAAAGGCTGTTAATTATtagtctgtttctgtttctgattgACAGGTGAAAGTGCTAATGCTACACACCAAGGGAAACCGTCAAGTGGATGTGAAGTTCAAGGGCTTTGAAAGAGTAATTAGTTAATGCTATTagaatgttttcagtttgtgttaAAGATTGGAataattttgttctttttttatttacatgccCAATATATGCAGTAGAGAAACCGCTTGGGCACTACAAATCGCTCACAGCCTGAATAAACCCAGCAGTGTCCATTGATTCTCTGATTGAATGGAAGACAATTCAGAGCAAGCAGTGTGAGTTTTCTCTGTCGCCATGTTTGAAACGGATCACCTGTTTCAAAGGTTGACTGATCTAATTATTCTCAATCAATCACTGTATTAAGAATTTCCATTTATATCAGTTCATGCTCTGTAGTCTAGGGGAGATCTAGTCTAGGAGCCAGATCATTGATGGaacagttattttttaacacagtgAATAGTTCTCAATTCACGCGCTCGAAGATAATTAAAGAGCAGGCTGCAATTGATTGTCTGCtggtatgtttgtatatttagcAAAAAATAGTCTTGTTCTGAGAGTATATTACTGGAAAATTGCCGTGGAGGTCCCTTTTATCAGATAGCTGTTATTGATTAATCTTCCCAGACAAAGTCACTGAGTCTATGAAGCCTTTCTCTAGTGATACAAAACCAATCCCAGTTCGGACAAATGGGAGGTTGAGAAATCATCAATTTGCTTTCAGGTGCATATTGACCCTGCTTCAGAAGCAGATAACTGGAAaccttgtgttttgtatgtCCAACAGACATGGCCAGCACAGCTTTGCAAGCCAGAGAGGAGTTGGTCATGTTTTCCACTTCTGGTGTTTGAAGTGTGCTTAGAGCTCTTTGATTGGAGACAGATGGTTGTCAGATAACTGTATGGCTTCTTAATGTTAACCCAGTATTTGCAAAGCTCCAGAATATTAAATAAGTGCAATCAGAGAAATGTACCTTCCTCAGTTGGGTACAAAACGCAGACCGTGCCTAAAGCTCTAAGTACACCACCTTCATAAATCATTTCCCTTTCCAcctattatttaaagaaacagaagTGTCTCATGGATCTACAGTTTTGTCAAACAGTGCTTTATGAATTCTGCGCTACTGTTTTAACAGTTAGACTCCGGGTAGGTGAAGCTCCTTCTTCAAAATTAATCTTGTAATGGAGTGatgattttttaagtgtttgttctcttcagcagctgtttaatttgggggaaacaaaatcacatGTATGTCTTTTGATAAATAAAAGCATGGAAACTCTAATTTCTG

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K10147 PPM1D, WIP1; protein phosphatase 1D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005562 True 5557 mRNA 0.48 6 4968486 4983410

Neighbor

gene id symbol gene type direction distance location
AMCG00005565 NA coding downstream 1950 4955046 ~ 4966536 (-)
AMCG00005563 bcas3,LOC107685068,LOC107562951,LOC107743646,LOC107664928 coding downstream 25138 4938151 ~ 4943348 (-)
AMCG00005566 NA coding downstream 32979 4932924 ~ 4935507 (-)
AMCG00005564 bcas3,LOC107743646,LOC107664928,LOC107757056 coding downstream 46795 4878015 ~ 4921691 (-)
AMCG00005542 NA coding downstream 205325 4762567 ~ 4763161 (-)
AMCG00005581 NA coding upstream 12243 4995653 ~ 5001142 (-)
AMCG00005582 ift20 coding upstream 98947 5082357 ~ 5085799 (-)
AMCG00005573 LOC108277496,LOC106581522,LOC106613355 coding upstream 175427 5158837 ~ 5161860 (-)
AMCG00005572 tpst1,LOC107662793 coding upstream 187363 5170773 ~ 5171615 (-)
AMCG00005588 crcp coding upstream 211809 5195219 ~ 5206581 (-)
G152942 NA non-coding downstream 436754 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 668088 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 708174 4257221 ~ 4260312 (-)
G152853 NA non-coding downstream 974965 3989919 ~ 3993521 (-)
G152815 NA non-coding downstream 1176042 3788208 ~ 3792444 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding upstream 367943 5351353 ~ 5352345 (-)
G153143 NA non-coding upstream 369943 5353353 ~ 5355697 (-)
G153178 NA non-coding upstream 503899 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 664948 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 758082 5741492 ~ 5748572 (-)
AMCG00005539 NA other downstream 675615 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1099277 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 1335774 3606961 ~ 3632712 (-)
G152645 NA other downstream 1877772 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 2078038 2872506 ~ 2890448 (-)
G153130 NA other upstream 317359 5300769 ~ 5302198 (-)
G153342 NA other upstream 1097825 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 1248749 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1506845 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 2125808 7109218 ~ 7145807 (-)

Expression


Co-expression Network