AMCG00005565


Basic Information

Item Value
gene id AMCG00005565
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4955046 ~ 4966536 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005565
ATGGCATCGGACTCCCCCCGCCGCCCCAGCCGCTGTGCCGGTGGAGTGGTGGTGAGAGCTCAGGCAGCCACAGAGCAGTCGTACATGGAGAGTGTGGTGACTTTTCTGCAGGATGTTGTTCCCCAGGCTTACACAGGAGCCCCGCCCACAGACGAGAAGGAGAAGATTTTATGGGTCAGATTTGAAAAAGCAGACATTAATGACATCGCCAGATCCCCCGAGTTCCTCGAGATGCACGGCAGTGCCAGTGACCCTCCACTGTTGCTCATGATTGGATACGCAGATGGGATGCATATCTGGAGTATATCTATCAGTGGAGAAGCCCAGGAGCTGTTTTCGGTGCGTAACGGTCCGGTGCGAGCCGCCAGGGTCCTGCCAGCCCCCCTCATCGGTAAGTATGAGAGTATGGACTCGGCCCATCCCAGGATGCTCgtgTTTCGCGCCTACTGGATTCAACCCAAGTCAAGTCCTCTGAAGGCAGACGGTTTTGCCGAGAAGAGACCTCTCCTCGGGGTCTGCAAAAGTGCCGGCTCCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005565 True 537 mRNA 0.57 7 4955046 4966536

Neighbor

gene id symbol gene type direction distance location
AMCG00005563 bcas3,LOC107685068,LOC107562951,LOC107743646,LOC107664928 coding downstream 11698 4938151 ~ 4943348 (-)
AMCG00005566 NA coding downstream 19539 4932924 ~ 4935507 (-)
AMCG00005564 bcas3,LOC107743646,LOC107664928,LOC107757056 coding downstream 33355 4878015 ~ 4921691 (-)
AMCG00005542 NA coding downstream 191885 4762567 ~ 4763161 (-)
AMCG00005543 NA coding downstream 204076 4749079 ~ 4750970 (-)
AMCG00005562 NA coding upstream 1950 4968486 ~ 4983410 (-)
AMCG00005581 NA coding upstream 29117 4995653 ~ 5001142 (-)
AMCG00005582 ift20 coding upstream 115821 5082357 ~ 5085799 (-)
AMCG00005573 LOC108277496,LOC106581522,LOC106613355 coding upstream 192301 5158837 ~ 5161860 (-)
AMCG00005572 tpst1,LOC107662793 coding upstream 204237 5170773 ~ 5171615 (-)
G152942 NA non-coding downstream 423314 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 654648 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 694734 4257221 ~ 4260312 (-)
G152853 NA non-coding downstream 961525 3989919 ~ 3993521 (-)
G152815 NA non-coding downstream 1162602 3788208 ~ 3792444 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding upstream 384817 5351353 ~ 5352345 (-)
G153143 NA non-coding upstream 386817 5353353 ~ 5355697 (-)
G153178 NA non-coding upstream 520773 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 681822 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 774956 5741492 ~ 5748572 (-)
AMCG00005539 NA other downstream 662175 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1085837 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 1322334 3606961 ~ 3632712 (-)
G152645 NA other downstream 1864332 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 2064598 2872506 ~ 2890448 (-)
G153130 NA other upstream 334233 5300769 ~ 5302198 (-)
G153342 NA other upstream 1114699 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 1265623 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1523719 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 2142682 7109218 ~ 7145807 (-)

Expression


Co-expression Network