AMCG00005572 (tpst1,LOC107662793)


Basic Information

Item Value
gene id AMCG00005572
gene name tpst1,LOC107662793
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5170773 ~ 5171615 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005572
ATGATCGGGAAgctgaaacaaaacatgttgcTGGCCTGCCTGATCATCAGCTCCATCACTGTATTCTACCTTGGCCGCCACGCCATGGAGTGCCACCACCGGGTGGAGGAGCGCAGCCAGCCGCTTGCCCTGGCCCTGGTGGGGAGCACCCTGAGGACCGGGCAGAACCACAGCTCCAATACCTTTGTTTACAACAAGGACATGCCCCTGATCTTCATCGGAGGGGTCCCCCGCAGCGGCACCACGCTCATGAGAGCCATGCTGGACGCCCACCCTGAGGTGCGCTGCGGGGAGGAGACCCGGGTCATCCCCCGCATCCTGGCCATGAAACAGATGTGGAGTCGCTCGGGCCGGGAGAAGATGCGTCTGGACGAGGCCGGGGTGACGGACGAGGTGCTGGACTCGGCCATGCAGGCCTTCCTCCTGGAGATCATCGTGAAGCACGGGGAACCGGCCACCTACCTGTGCAACAAGGACCCCTTCGCCCTCAAGTCCCTCACCTACCTGGCCAAGATCTTCCCCCACGCCAAGTTCATCCTGATGATCCGCGACGGCCGGGCATCCGTCCACTCGATGATCTCCCGCAAGGTCACCATCGCTGGGTTTGACCTGGGCAGCTACAGGGACTGCCTGACCAAGTGGAACCGGGCCATCGAGACCATGTACACGCAGTGCCTGGAGGCGGCTGACAAGTGCCTGCCGGTGCACTACGAGCAGCTGGTCCTGCACCCCGAGAAGTGGATGAGGACGCTGCTGAAGTTTCTCGACATTCCCTGGAATGAGGCCGTCCTGCACCATGAGGAGCTCATCGGGAAAGCAGGAGGCGTGTCACTCTCGAAGTAA

Function

symbol description
tpst1 Predicted to enable protein-tyrosine sulfotransferase activity. Predicted to be involved in peptidyl-tyrosine sulfation. Predicted to be integral component of Golgi membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including alar plate midbrain region; immature eye; integument; nervous system; and periderm. Orthologous to human TPST1 (tyrosylprotein sulfotransferase 1).

NR:

description
PREDICTED: protein-tyrosine sulfotransferase 1

GO: NA

KEGG:

id description
K01021 TPST; protein-tyrosine sulfotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005572 True 843 mRNA 0.62 1 5170773 5171615

Neighbor

gene id symbol gene type direction distance location
AMCG00005573 LOC108277496,LOC106581522,LOC106613355 coding downstream 8913 5158837 ~ 5161860 (-)
AMCG00005582 ift20 coding downstream 84974 5082357 ~ 5085799 (-)
AMCG00005581 NA coding downstream 169631 4995653 ~ 5001142 (-)
AMCG00005562 NA coding downstream 187363 4968486 ~ 4983410 (-)
AMCG00005565 NA coding downstream 204237 4955046 ~ 4966536 (-)
AMCG00005588 crcp coding upstream 23604 5195219 ~ 5206581 (-)
AMCG00005587 prkrip1,LOC107600793,LOC107691809 coding upstream 70186 5241801 ~ 5244322 (-)
AMCG00005586 NA coding upstream 77759 5249374 ~ 5268678 (-)
AMCG00005619 rabep1,LOC106603450 coding upstream 111961 5283576 ~ 5296553 (-)
AMCG00005618 derl2,LOC106567674,LOC107735937,LOC107579789,LOC107093934,LOC107580170 coding upstream 134973 5306588 ~ 5309932 (-)
G152942 NA non-coding downstream 639041 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 870375 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 910461 4257221 ~ 4260312 (-)
G152853 NA non-coding downstream 1177252 3989919 ~ 3993521 (-)
G152815 NA non-coding downstream 1378329 3788208 ~ 3792444 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding upstream 179738 5351353 ~ 5352345 (-)
G153143 NA non-coding upstream 181738 5353353 ~ 5355697 (-)
G153178 NA non-coding upstream 315694 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 476743 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 569877 5741492 ~ 5748572 (-)
AMCG00005539 NA other downstream 877902 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1301564 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 1538061 3606961 ~ 3632712 (-)
G152645 NA other downstream 2080059 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 2280325 2872506 ~ 2890448 (-)
G153130 NA other upstream 129154 5300769 ~ 5302198 (-)
G153342 NA other upstream 909620 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 1060544 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1318640 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 1937603 7109218 ~ 7145807 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location