AMCG00005573 (LOC108277496,LOC106581522,LOC106613355)


Basic Information

Item Value
gene id AMCG00005573
gene name LOC108277496,LOC106581522,LOC106613355
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5158837 ~ 5161860 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005573
ATGAGACTCGGAACCCCCAACCTTGTGACTGAGAAGTCTACTGGGCGATTGATAGGTTTAAAAAGTAAGACGGATAAAGAAAGATCAGACTCCCAGGAGGGCATGTCTGGAGAAGTCTCTCGCCCAGCAGCCCACCCACCGGCCTGTCCTGCCGATCACGAGAGGGGTCTGAGAGGAGCAGACGCGCGATCTGATGCTCAAGTGGAGCGCTCCACCGACCAAGTCATCAAACCAGTCAACGTGGAAGCCTTATCCAAGTGGGTTGGCAAGATCCCGTCCGACGTGTTGCGGGACATGCCCGTGATCGCCCCCATGTTGGCACGGCTGGGGTATGACCCGCACGCCAACCCACCGAACTACGGGAGGCCCGATCCCAAGGTCCTGGACAATACCAGGAGGAGTGGCTGTGTCAACACTGTTGTAGACTTTGCCCCATTGAGTAATACCTTGCGGTTGAACGTTGAAGTGGCCAATGTTAAATCTGAGACAAAAGATGCAATTTGA

Function

NR:

description
PREDICTED: protein-tyrosine sulfotransferase 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005573 True 504 mRNA 0.55 3 5158837 5161860

Neighbor

gene id symbol gene type direction distance location
AMCG00005582 ift20 coding downstream 73038 5082357 ~ 5085799 (-)
AMCG00005581 NA coding downstream 157695 4995653 ~ 5001142 (-)
AMCG00005562 NA coding downstream 175427 4968486 ~ 4983410 (-)
AMCG00005565 NA coding downstream 192301 4955046 ~ 4966536 (-)
AMCG00005563 bcas3,LOC107685068,LOC107562951,LOC107743646,LOC107664928 coding downstream 215489 4938151 ~ 4943348 (-)
AMCG00005572 tpst1,LOC107662793 coding upstream 8913 5170773 ~ 5171615 (-)
AMCG00005588 crcp coding upstream 33359 5195219 ~ 5206581 (-)
AMCG00005587 prkrip1,LOC107600793,LOC107691809 coding upstream 79941 5241801 ~ 5244322 (-)
AMCG00005586 NA coding upstream 87514 5249374 ~ 5268678 (-)
AMCG00005619 rabep1,LOC106603450 coding upstream 121716 5283576 ~ 5296553 (-)
G152942 NA non-coding downstream 627105 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 858439 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 898525 4257221 ~ 4260312 (-)
G152853 NA non-coding downstream 1165316 3989919 ~ 3993521 (-)
G152815 NA non-coding downstream 1366393 3788208 ~ 3792444 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding upstream 189493 5351353 ~ 5352345 (-)
G153143 NA non-coding upstream 191493 5353353 ~ 5355697 (-)
G153178 NA non-coding upstream 325449 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 486498 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 579632 5741492 ~ 5748572 (-)
AMCG00005539 NA other downstream 865966 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1289628 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 1526125 3606961 ~ 3632712 (-)
G152645 NA other downstream 2068123 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 2268389 2872506 ~ 2890448 (-)
G153130 NA other upstream 138909 5300769 ~ 5302198 (-)
G153342 NA other upstream 919375 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 1070299 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1328395 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 1947358 7109218 ~ 7145807 (-)

Expression


Co-expression Network