AMCG00005574 (LOC106602867)


Basic Information

Item Value
gene id AMCG00005574
gene name LOC106602867
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5372461 ~ 5405899 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005574
ATGCAGACCAAGCGGGAAACGGAGCGCACTGCACAAACAAGGGAGGTGCGAAACAGCCTGTCTGCCTTCATCCGCTTCGGAGCACCGCAGGGACCGGAGGCCATCTTCATCTGCAGCTTCATGGTGGCTGCTCCTATCTTTGGGTACCTTGGCGACCGCTTCAACAGGAAGATCATCCTCAGCTGCGGCATCTTCTTTTGGTCGGCTGTGAccctctccagctccttcaTCACCAAAGAGTATTACTGGCTGTTTGTCCTGTCCAGAGGATTGGTCGGAATTGGAGAATCCAGCTACTCCTCCATCTCACCCACCATCATAGGAGACCTCTTCACAAACAACACACGGACCATGATGCTTTCCATCTTCTACTTTGCAATCCCTCTGGGAAGTGGTTTGGGGTATATCTTGGGATCGAGTGCAAAGCAAGCAGCAGGAGACTGGCACTGGGCTCTGAGGGTGTCTCCAGTCATGGGGATGACAGCAGGAAGTCTCATCCTATTCTTCGTGCCCGAACCCAAGCGCGGCCACGCAGACCAGCTGGGGGGGCGTCTCAAGGCTCGCACACCATGGATCTGTGATATGAAGGCCCTGGCTAAGAACCGCAGTTACATGTTCACCTCGCTGGCGTCAGCGGCAGTGTCCTTCGCCACCGGAGCTTTTGGCATGTGGATCCCCTTGTACCTGTACAGAGCCCAGGTGGTGCAGAATACGGTGATGCCCTGCAACAAGGAGCCCTGCAGCAGCAAGGACAGTGCCTTCCCCTCCCCCAGCCTGATTTTCGGGGTCATAACGTGCGTGACGGGATTCCTGGGCGTCCTGATTGGTGCGGGCGCCACACGGCTGTGCCGGCAGAAGACAGAGCGCGCGGACCCCCTGGTGTGCGCCGTCAGCATGCTGGGCTCGGCGATCTTCATCTGCCTCATCTTCGTTGCTGCCAAGAAGAGCATCGTGGGAGCCTATTACGTGGTGATTCCCACTCGCCGAGCCACCGCGGTCGCCCTACAGAGCTTCGTCTCGCACATCCTGGGCGATGCCGGCAGCCCCTACCTGATTGGCCTGATCTCGGAGGCCCTCCAGAAGAGCTACGCTGACTCCGTCCTGTGGCAATTCCTCAGCCTGGGCTACGCTCTCATGCTTTGCCCGTTCGTCATCGTCTTGGGTGGGATGTTCTTCCTGGCCACAGCCGTCTTCTTCCTAGATGACAGAGACAAGGCAGAGAAACAGTCACAAATTGAGGAGATCTGGAGGATCAGTGGAAGAGGAATTCGCCAGCCGTAAAAACAGGGAGAAGAGGAGATCTCTCATTTGAGAACACATCTCCAGATTAAGattacaagttttttttattattattattatttacagtaactGTTTCAGAAACTGTTTTCAACTGGAAGCCACACTGATCCAAAGAGTCCTCGGTCTCACAGACGCCAATTATGCGCAAGGAGAGGTGAACCAAAAGAACCTGCATCTCTGAAAATCCCTAACTTGGGCTTTGCTCCCACATTAGCACTATTTGAACATGTACTACAATGCCAATAACCAAACTACTGAAGGGGACACAGGGAACTCGTGCCACTTTCCTCCCTGTTGCAAGTGCCATATCATTAGACTTCTTCGTGGATTCCAAACTGGTCGATATAGGAGGTCACTCAAGAGTCAAATCGCTGAACACAAAAAGACCGAGTCAACTACAATGACCTGAAGGTGTCCAGTTCAGCAAAACTGCAGTAGGAGATCTTTTAGATGTTGTTTTTAGCACTTAAACTCATTACCTGAGATGCTTTCTACAGCTGCATAGAAGGATCCTTGGAAATATGAAATGAAGCAAAAGCTAATGACAGAACTGGACAGCAATCCCAATTTGTTGAATCACCCCcacatttgattgtattttaaatcaccCAAATACTCCTCTCCAAAGCAGGGATCGGTTTGGGATGCTCTTCTTGCATAGAAAGTCCAGGGGGTCTCCAGTAAAAAGCCAGCACAGAGGATGGATAATCGACAGCATCGAGGAGAAACCGGTCCTGTCCACGACAGAACACCCTGTCCAAGTTTTTTGTGGTTGCGGGGGATCCAATCCTGGAGGGTTGGAGGTTTGCTTTAGCACAGACGGCCACGCAAATTATGTAGAGGACTTTGCGTCAGGACTTTGGCACAAGTCTAGAATGAAGTCACACACTGAGTCACAGGGACGAATGAAGAATGACCTCTGATCCGTACTCTTGTTTCCACAAACTATCTCACAGCTTGCCTTCGAGCTACTGCATCTGAATAACGACCAGttgaaaaagctttttattttgttccactGGATACTGGTGTCATAGGACTCAATTTGACttgcattaaatgaaaaaaggtcTAAAGAACATTTTTTGGACCCCAAGAACAGGGGAGAAAGATAACTGGAGACAACCTTAAGTTGATGCcaacactgttttgttttttccacgcacaaacacacaaaaataacgCACCTTACTTATCTTATCAAAAGCATTACCTGAACACACCCATGTTCACCTGAAGACCAAAACAAACTAGTTATGAAATGCTTTGATGGGGGAAGAAGAGTGACTCCCCCCCTGCTAGTTTCTTTTGGCTTTCTCTGTATTCTGCCAGAGTGTCTGAACGCTGAGGACACGAGTGTTCAGCCTGTGTGCACAGCGGAGTTATATCTTATCAAgcttcttttattttgtgattgtttAATGGATGTTTTTACAGATATGAgtttatatataagtatatagaGAGATATATCGTGCCgcagtttttaatatattgtatacaataGCTTCAGGATGCAGTGTATTTATACCTTTGTTTAccacaatgaagaaaaaaaaaggagtgGAAGGACATCAGGATCTTCTCAccttagtgtgttttttttattattattgttgttgtttctgctaTGCCGCCCTCTATGTGgcttatacatatatagaatACCATAACAACACCACACCAGAACATCTCAGAGGATTGTGATccattatgtgtttgttttatgacaTCAGTGGTGTAACACACATGTGGAAATGAAAGGGAAGCGCAAGCTCTTTTCTATTgatctctcctctctttcctaGAAATGTCCTGAGTCAGCTCTGTGTATTAATTAAACTCCAGAGAAAGCGGGGGTCAGGATAGTTTTGCTGATGATGCACAGAATCCAGATCTGTTGGTGCAAGCACATCCGGACCCTAATTCTGCcttcccattattattattattttactattattttagcAATTAAAAGGCATCTTTGGATTAACTATTGCACTACACAGATGCCAGATCCTCTAAATTTCATgcataaaataaagaacacatcTCCTTTACAGTCAACAGAACTCTCCACCAAAAaggaacgagagagagagagagaaaatggtgCCAATTGTGGCTCAGGTTGACTTAgaatagaattaaaaacaagaagtgaGGCTTAAGATTAATTCCtgaaaaatgtttgaattattattcCAATTGTTGGGATGAAAGTAGCTTTTTTGATTCGATGAACCAAACCTTTCAGTGTCTGCATCCAAAGCGAATGCATTGCTGCCCTACAAGCTAATTAATTCATAGCACTTTTTCATGACAGGTGAGCCAATCGCCCAATTTCTGCAACTGACCTCAGCTCAGTCCTGGGCTTTGTGTGTAAGTGAAGCCCAGACAGATTTTTCCTCatgaacaggaaaataaaataaaaaaagctagtGACATTGGTTGAGCACTGGTATCTCTTGTTATGGCTGAAGAGGGTAGCAGTGGGGGTGGAGATGTTTAAATTGATCCAGGACACAAACTAAGATGAGTCTAACCCTCTCAAGCATGTATTCCACATTGCACTTTTGGACAATCGTTAATAAAACCGGGGCTGTACAGAGATATATCATGTGCACCATTAGGACATACATAGCAGACCCATTAGAAAAGTACAACCCAGACATTGGTCACCCCCAAGCATTTCCCATTTTGAAACCCTGGTTATAAAGTTGCTTTGTGAGTTTCATGTGTTCTGTTGTTATGTATTATAAGAAACTAAAGAAAGCTACATACCTGGTTGACAATGCCAAAATCAGATTCTAGCTctccttttaaataatgtttgtttttgttgttttttttaaatcaaatgttaattaaatagcaCCTGTCCATCACAAAAGTGATCAGATTGTGCGCTTTCTTGTCATACAAGAATTGTGTAAAAAGAGAATCCTATTTCTGATGTGATGCAGAAAAAagagactttttattttttagagcCAGTGTAATTAAATCTAGGAAGTAACTGTGATACTCCAACACGGAGCAGATGAAATGTACACctatatgtaaattataaaataaacttatttAATCACAAGAGA

Function

NR:

description
PREDICTED: protein spinster homolog 2 isoform X1

GO: NA

KEGG:

id description
K23677 SPNS; MFS transporter, Spinster family, sphingosine-1-phosphate transporter

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005574 True 4400 mRNA 0.45 11 5372461 5405899

Neighbor

gene id symbol gene type direction distance location
AMCG00005616 NA coding downstream 24193 5344509 ~ 5348268 (-)
AMCG00005620 NA coding downstream 34933 5317898 ~ 5337528 (-)
AMCG00005617 NA coding downstream 59487 5310659 ~ 5312974 (-)
AMCG00005618 derl2,LOC106567674,LOC107735937,LOC107579789,LOC107093934,LOC107580170 coding downstream 62529 5306588 ~ 5309932 (-)
AMCG00005619 rabep1,LOC106603450 coding downstream 75908 5283576 ~ 5296553 (-)
AMCG00005576 LOC106602867,LOC107597455 coding upstream 38262 5444161 ~ 5444610 (-)
AMCG00005575 NA coding upstream 55020 5460919 ~ 5467836 (-)
AMCG00005625 NA coding upstream 102353 5508252 ~ 5513394 (-)
AMCG00005606 NA coding upstream 260961 5666860 ~ 5709455 (-)
AMCG00005605 NA coding upstream 342877 5748776 ~ 5751438 (-)
G153143 NA non-coding downstream 16764 5353353 ~ 5355697 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding downstream 20116 5351353 ~ 5352345 (-)
G152942 NA non-coding downstream 840729 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 1072063 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 1112149 4257221 ~ 4260312 (-)
G153178 NA non-coding upstream 81410 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 242459 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 335593 5741492 ~ 5748572 (-)
G153272 NA non-coding upstream 394749 5800648 ~ 5800906 (-)
G153313 NA non-coding upstream 642231 6048130 ~ 6048470 (-)
G153130 NA other downstream 70263 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 1079590 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1503252 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 1739749 3606961 ~ 3632712 (-)
G152645 NA other downstream 2281747 3071860 ~ 3090714 (-)
G153342 NA other upstream 675336 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 826260 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1084356 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 1703319 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 2379655 7785554 ~ 7788321 (-)

Expression


Co-expression Network