AMCG00005575


Basic Information

Item Value
gene id AMCG00005575
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5460919 ~ 5467836 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005575
ATGGAGGCAGCTGAGCCGGAAGGCGAAAGGTCGCTCCCAACGTCAGGAGCTGCTCGTGATTATGGCTCCGTGAGCGAGAACCAACCGAGGCCTGAAACACCGACAACAGGCGCCCCTGTCCGCTCTTGTCGATACTACGTAGCGGTTGCAGTTCTTTGTTACATCAACCTTATCAACTACATGGATCGCTACACCATAGCAGGTGTTCTTCTGAACATCCAGACATTTTTTGATATTAGCGACCGCACAAGTGGACTGCTGCAGACAGTGTTCATCTGTACCTTCATGCTGTTGGCCCCACTGTTTGGATACCTCGGAGACCGATACAACAGGAAGTTCATCATGATAGGAGGCCTGAGTGTGTGGATTGTGACCACGCTGACCAGCTCCTTTGTGACTCAGTCGCAATTCTGGCTGCTACTGCTGATGAGAAGTCTGGTGGGCACCGGAGAGGCCAGCTACTCCACCATCGCTCCCACCATCATCGGAGACTTCTTCTCTGGCAGCAAGAGAACCTTGATGATCTCCTTCTTCTACATTTTCATTCCTGTTGGAAGTGGTCTGGGCTACATCATTGGATCGAGGGTTGCAAGTGATCTAGGGGACTGGCGCTGGGCACTCAGGATCAATCCTATCCTGGGAGTGGTCGGTCTCATTCTGCTCATCCTGCTGGTTCCCAACCCAACCAGAGGTGCTTCCGATGTCCAGGACGGAGTGGAAATGGAGCGGACCTCCTACCTGGCAGACATCAAGTACCTTCTGAAAAATCGCAGTTTCGTCTGGTCCTCTCTGGGAGTCACAGCCATGGCTTTTGTCACTGGTGCCCTGGCCTTCTGGACACCCGTGTTCCTGTCCCGAGCACAGGTCATGCAGGGAATCAAGAGGCCCTGCAAGCAGGAGCCCTGTGATACATCTGACAGCTTAGTGTTTGGTGCAGTCACTGTGGTGACGGGGATTCTGGGCGTGTTCATCGGCACATCGCTTGCCAGGTTGCTGCGGAACAGGATCCCTCATGCGGACCCCCTGATCTGCGGAGTGGGCATGCTCAGCTCCGCCCCCTGCTTCTACCTGGCCATCATACTGGCCTACAGGAGTATACCGGCGACTTACAGTGAATCCTCAGAGCTGCCCGTCTCTCCTCTGTCAGTCCAGGTGTTCATTGCTCTGGGGGAGACACTGCTGGCTCTTAACTGGCCTCTTCTGGCTGACATCCTGTTGTACGTTGTTGTACCAACCAGACGGGCGACAGCAGAGGCTTTACAGATCATGGTCTGTCATCTTCTTGGCGATGCTGGCAGTCCTTTCCTGATTGGCGCGATCTCAGATGCTCTGGGTAAAGGGAAGGCAGATTCGGTCATCTTGAAGTTCAGGAATCTGGAGTACAGTTTTCTCCTGTGCCCTTTTGTGGGAGTTCTGGGGGGCCTGTTTTTCCTCTTCACCGCTCTCTACGTGACGGAGGACAGGAAAACTGCCCAGCAACTGGCTGCAGGAGAGATACAGGGGAGCTGAGAGCTGGTTCTGTCTGTGGGGGTGACTGGGGGTGATCGCTGAGGAAGACCTGCTTAGGCCTGGAGTGCCAAGACAGTCCTCATCCTGCTGCTCAACTCATCTGAGACCATGCTGCAGGTTCGACAGTCAGGAACTGGTCTCACACAACCACAACAGCAATATCCTGCCAAGTACTGTACTTAAGATACTCCACCTTATATTAGAAAATACACAACTGCTTTTTATTGAATGGGTTCCCTGTTGTGATCATGTTTGGGTTTTAAATGGGGGgatttttactgttttttaatgtaatatttttaaacaacctCAGACAATGTATGCAATGGACAAACACTGGGCAGGGGTCCTTTATGCAGTTTAGGTGTCTTTAAACAAGCCTTTACTCTTGGCACAACTCTGTG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006869 lipid transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23677 SPNS; MFS transporter, Spinster family, sphingosine-1-phosphate transporter

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005575 True 1913 mRNA 0.52 12 5460919 5467836

Neighbor

gene id symbol gene type direction distance location
AMCG00005576 LOC106602867,LOC107597455 coding downstream 16309 5444161 ~ 5444610 (-)
AMCG00005574 LOC106602867 coding downstream 55020 5372461 ~ 5405899 (-)
AMCG00005616 NA coding downstream 112651 5344509 ~ 5348268 (-)
AMCG00005620 NA coding downstream 123391 5317898 ~ 5337528 (-)
AMCG00005617 NA coding downstream 147945 5310659 ~ 5312974 (-)
AMCG00005625 NA coding upstream 40416 5508252 ~ 5513394 (-)
AMCG00005606 NA coding upstream 199024 5666860 ~ 5709455 (-)
AMCG00005605 NA coding upstream 280940 5748776 ~ 5751438 (-)
AMCG00005610 LOC101160255,LOC103021402,LOC100700540,LOC105025792 coding upstream 452364 5920200 ~ 5931156 (-)
AMCG00005611 NA coding upstream 468979 5936815 ~ 5947317 (-)
G153143 NA non-coding downstream 105222 5353353 ~ 5355697 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding downstream 108574 5351353 ~ 5352345 (-)
G152942 NA non-coding downstream 929187 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 1160521 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 1200607 4257221 ~ 4260312 (-)
G153178 NA non-coding upstream 19473 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 180522 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 273656 5741492 ~ 5748572 (-)
G153272 NA non-coding upstream 332812 5800648 ~ 5800906 (-)
G153313 NA non-coding upstream 580294 6048130 ~ 6048470 (-)
G153130 NA other downstream 158721 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 1168048 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1591710 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 1828207 3606961 ~ 3632712 (-)
G152645 NA other downstream 2370205 3071860 ~ 3090714 (-)
G153342 NA other upstream 613399 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 764323 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1022419 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 1641382 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 2317718 7785554 ~ 7788321 (-)

Expression


Co-expression Network