AMCG00005581


Basic Information

Item Value
gene id AMCG00005581
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4995653 ~ 5001142 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005581
ctcccccccccccacgtcCCAGCCTTAGACATGCATATGGGGGGCCAAGCAGGCCATTGGACtacaacatacaacacacatacaacatACACTGTCACACACGCACAGTACTCACTATGGACGTCAACGACCTCTAGCGGTCTGAAGCTGCAAGTGTCTACCTTTAATATAAGATTCAAACGACATCACAAACTGGAAGGGGGAAACTAAATCTAAGACACCAGCAGAGTTTGatgaattaatttcagttttgcGTGCGGTATGGAAATCACGAATTACAATTCAAGCAGCAGCAGTTACAGTTATGATCGCTTTGGGGTGTGTGGCAGCTGATGCCATCCAATCCTGGACAGTGCTGAGAGGGCTCGGGAGAGAAGCGGGTCCGGTGTGTGGATCTGTCTGTGGAGGCGGGACACCGAGGAAGTGATCTGTGTCGTGGGAAGTGACGGactgcagctctgcgcagatctgcggaatcGCGGCGCTCCCATTGGCCGAGACACACGTTCCCTCCGGGCTTTAATGTAACCAGTGCGAGGATGAGGCATTAACCTCCGGCGCTGTCTGCACTGATCTAACTGCACTTTCCCAAGGTCGCGTTCACTCCCGCAGCAGTGGGATTATTATCGGCTCACATATAATAACCCAGCGCGGCGGCCACAGCGCTACATTGAAACGGTTACTGATACCGTCTCCTGCTCTGTGACGTCACCGCTGTCTGATCCGCGCACAGCCGGGGAGGTCAGGTGGGATGAACTGGGATGGGACTGGAAGTGCTGCTGTACGTCCCCAACGTTATAGGTTACATCCGGGTCCTGCTGCTGCTCGTTGCCTGGTGGTTCTTCCACAGTTCATCTGTCTTCCTTCCCTGTTACGTCACTTCGATCATACTTGATGGGGTGGACGGCTGGGCGGCTCGGCGCCTCGGGCAGACCTCGGAGTTCGGAGCCTGGCTGGATGTGGTGATTGATAACCTGGGCCGGGGAATGCTGTGGAGCCTGCTGTACGAGTGGGGCTGGCTGGTGGTGGCGCTGGagtggtgtgtgtttgtctgcaccCACAGTACCCTGGGGGCCCGGTGGAAAAGCCATGCTGGGCCGTGCCCCTCCTGGGTGCAAGCCGTAATGGCCAAAGGCTTCAAGACTCCCATGGGTGCGTTTGCGATCAGTGGGTTGCATGTTCTGCCCGTGTGGCTGTATGGGGTGCACTATGGGGTCCTGAACGAGCCCCTCTCCGTCCCAGCATGGCTGCAGGGCCTGGGGCTGCTGCTCCTCACGGCCGGCCGGCTGCTGTGCTTCTCTGTCGAGGTGTGGTGCATCTGGCTGCACATCAGATATCTCACCAGAGACGAGGAGAAGGCGAGGGAGAAAGACTGAAGAGAGAGACGGCTGCGACTGACATTCCTCCCCGGCTTGTTTACTCCAACAGGGACTGCGCTCGTGTCATGGCCAACGTGCAGCTCAACCTAAAATGACAGCTTGCAGGAACCGAATGAGCAGTCAACTGTGGATAGTGCTGAGTAGCGTAGTGTAGTCTAGTGTAATCATTGTTGGGAGATGTACAGGAGTTTGAAAGCAGAGGGCCGCAGCGGGTTTGGGTGTGAGGGACGAGGACGAGGCATCTCGGCCCTTGCTTGCTTCCGCCAGAGTACGCCCTCCTGAGAGAAATTGCTGAGCTAGTGCTCGGCGAGGCTAAACGATCAAGAATTCAGGGTCTTTTTTTGGGGAGTCTTCAGTAACTGCAATTCTTAGAAGAAAGCAGTTGCAATTCTGTCAGTCATTCTCCCCACAAAACAATTTCAGTTTGGGCTAAGGGCTTTAATTGGTCACTTGCCCAACCTGTTTCTGGAATGTGACCCTTCCAGTCTTCCTGTAAAACATTATAGGAAAAAAAGTCAACGTCAAGGGAAAATTGAATGCAATCGTTAAAGAGCAACTATTTTTCTACCTGCTGTCAGTCTTGGGCGATGTTTCTGGGCACAACAGGTTAAATCACTGGCCAAGCGGCTCTTCAGATGTTGGGAAATGCACTTAAAAATGGCAGGAGTGTCCTGGCATCCTACTTTtagatttaatcatttatttatttttaaaatgagagagaaaagcaaTGTTGTCTTACagaatgttgtgtgtgtttattaatgtgGAGAGAGTGAATTCCAAAGAACTGTACTGCTACCAAATgatacacaaaaaacagattCTTCCCTTGATTGTTCATTGAGAATATAGAATGGGCATACAGCTCAAAAATTACCCCCCACCGTCTCTTATAAGCACCTTTTCTACACTCCACATTATAACAGCGCTATCATCTGCTGCAAGAAAAGagattacaaataaattaaaatcaaaacaattgaGTAAAacttatttcacaaaatggtgGTGCAAAGCTTTCATGATCAATATTTTCAAAGAAGAGAAACAATGGCTAGCAAACTCTGCATTAACACTATATTTAgcagtatgtgttttttttttccagcaatagTTACAGAAATTCACAATGTTGGttacaaacatgtttaatatggTTTGATGGTTACACAATGTTGGGTACTGCAGACTGTATGGAGTTAGGATCCTGCtggattattatttgtttcttacaCAAGCAATGAAAGGAACCTTGTCTAAACATTAGCAAAGTCTATCTATACACAAGCTCACTGTGGCACTACTGAGGGGGACTTCTTAGAATAGGAATTTAGTGTGTCTGACGGATCTTAATTCCACGTTCATCCTCCCGAACCCTTCGGGCAGAAGCTTTAAAAGGGCGGAATCCCCATagttaaaatgtttatgaagaatacaaaaatagtacagtgttaatatgaaataatttctTCAAGCATAGTTGTCTCCATTCATATTGTTATATAATaagcaatataattaaaaaaatcacttctAACTGAatagcaaaaatgaaaaatggtaCTTCTGGCATACAGCAGAGATGcaaagaaattagaaaaaaaaaaaaaaggaacatggAGTGATCCATTACAAACTTTGCAGCACAAAACAAACTTTATATTCCAtacattaaatttaatttcatggGGAACTGTGCACTTCAATTCACTCACTAAGGCCACTCATTCTAGTAGAGGACAAGTCCTGTGTAATGTAACTGTCGAGTGCAGCAAGTCGAACGCATGGCTAAACTACAGCAAGACTAACTGTGCTGGTAGTGGTGTCCGCCTGGCCCCCCTGTCACCTGGGTCATCACGATAAGAGTACGGTCCCGAGAgcagagcaaaataaataaatctgggCTTGACATTCATACAATAGAACTTTAATATGGATTACTAAATCCATATGGTTTGCAATGTCAGTTTTAGTAAAATCAGAAAATTAAAAGATACCTTCATGTCCCGCTGACGAAGAGGTACATAAACACCCTCACCACCCCCTCCTACCACCACCACGG

Function

GO:

id name namespace
GO:0044444 obsolete cytoplasmic part cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005581 True 3444 mRNA 0.47 6 4995653 5001142

Neighbor

gene id symbol gene type direction distance location
AMCG00005562 NA coding downstream 12243 4968486 ~ 4983410 (-)
AMCG00005565 NA coding downstream 29117 4955046 ~ 4966536 (-)
AMCG00005563 bcas3,LOC107685068,LOC107562951,LOC107743646,LOC107664928 coding downstream 52305 4938151 ~ 4943348 (-)
AMCG00005566 NA coding downstream 60146 4932924 ~ 4935507 (-)
AMCG00005564 bcas3,LOC107743646,LOC107664928,LOC107757056 coding downstream 73962 4878015 ~ 4921691 (-)
AMCG00005582 ift20 coding upstream 81215 5082357 ~ 5085799 (-)
AMCG00005573 LOC108277496,LOC106581522,LOC106613355 coding upstream 157695 5158837 ~ 5161860 (-)
AMCG00005572 tpst1,LOC107662793 coding upstream 169631 5170773 ~ 5171615 (-)
AMCG00005588 crcp coding upstream 194077 5195219 ~ 5206581 (-)
AMCG00005587 prkrip1,LOC107600793,LOC107691809 coding upstream 240659 5241801 ~ 5244322 (-)
G152942 NA non-coding downstream 463921 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 695255 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 735341 4257221 ~ 4260312 (-)
G152853 NA non-coding downstream 1002132 3989919 ~ 3993521 (-)
G152815 NA non-coding downstream 1203209 3788208 ~ 3792444 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding upstream 350211 5351353 ~ 5352345 (-)
G153143 NA non-coding upstream 352211 5353353 ~ 5355697 (-)
G153178 NA non-coding upstream 486167 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 647216 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 740350 5741492 ~ 5748572 (-)
AMCG00005539 NA other downstream 702782 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1126444 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 1362941 3606961 ~ 3632712 (-)
G152645 NA other downstream 1904939 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 2105205 2872506 ~ 2890448 (-)
G153130 NA other upstream 299627 5300769 ~ 5302198 (-)
G153342 NA other upstream 1080093 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 1231017 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1489113 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 2108076 7109218 ~ 7145807 (-)

Expression


Co-expression Network