AMCG00005582 (ift20)


Basic Information

Item Value
gene id AMCG00005582
gene name ift20
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5082357 ~ 5085799 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005582
CCCACTTGTTGAGAAAATGTGAGAAATTAATTTGGGAATGaattcaacccccccccccagacagGGCAGGTGGGAGCGCCGCGGAAGTGCCGTGTTGGAGGCGAGCGGAGCCGGACTGTCGCCCTGGCAGCCGGAGAAACACGGATCAGAGGAGGAGTCTGGCGGCCCCTGTGTCACATCCATCCCCAGTCCAGGAAAGACAAGTCCGCTCCCCGGTCCTCCTTCCCCCTCCCGACCTCAGGCCCCCCAGCCATGGCGAGAGACCCTCTGTCAGAGGCCGGCCTGCACTTCGACGAGCTCAACAAGCTGCGCGTGCTGGAGCCGGAGGTGTACCAGGAGACCACCCAGCTGAAGGAGGAGTGCAAGGAGTTTGTGGACAAGATCGGCCAGTTTCAGAAGATAGTTGGGGGGCTGATCGAGCTGGTGGACGAGTTGGCAAAGGAGGCTGAAACAGAGAAGATGAAGGCGATCGGGGCCAGGAACCTGCTGAAGTCCGTGGCCAAGCAGAGGGAGGCCCAGCAGCAGCAACTGCAGGCTCTGATCACAGAGAAGAAGATGCAGCTGGAGAGGTACCGGATCGAGTACGACGCGCTGTCCAAAGTGGAAGCCGAGCAAAACGAGTTCATCGACCAGTTCATCCTTCAGAAATGAGCCTCGTCCGACGGGGGCCTGTGTGTGGTGCCTGTGAGAGGGATCGGTGTGGACAGTGCGCCTGCGGTCCGGTGGACGGGCAGACCGTCCATTCATCAGCCCCATGAACACACACTCCGCATTCATTAACACATACTACAGCCCAGCCTGGAGCACAGCGCAGAAATGCCATGCGCTCCAGGACTCAGCAGGACCAGACATCTAAAGGAACAAATCTCTAgatggtttctttgttttccctcaCATTATATGACCGAGTGTTTGAAGTAGTCTGtcctaaagaaaaaaaactgaaatttgaATGGTTTTGTGTCAGCATTAtcttttacaattataattcaAGGAAAAAGCTATTTATCTACCAATGgacttgtattatttatactatttatatcCCGTAAAGCTAGTTTTCctacattttttacaaattgaaaataatcgCTGCATGgtactggaaaaaaacagaaccctAATGTATGAATATTTTGTGTTCAATATATTGTACGGTTTTATAACCCTTTACAAACATGGTTCTATCTTTgcttaaaatgcatataatccAGGTGTTACATATCTGTCCATGGACCAAACCAAAATCTacgtattgtgtgtgttttagtctTTTAAGGTGTTTatatgaccagttcattaaatacatgtgtatattaTTCCTTGTGCTTTTTGTTGAGCCCTGTACATGTGCCCAGTTTGTGTTGCCTGTAGTGCTACAAACTGCAGACATTAAAGGCAAATGAACAAGatcttgtttaataaaaattaaggtcatttgagaataaaaaca

Function

symbol description
ift20 Predicted to be involved in several processes, including centrosome localization; intraciliary transport; and regulation of platelet-derived growth factor receptor-alpha signaling pathway. Predicted to act upstream of or within cell differentiation and cell projection organization. Located in axoneme and ciliary basal body. Is expressed in head and retina. Orthologous to human IFT20 (intraflagellar transport 20).

NR:

description
PREDICTED: intraflagellar transport protein 20 homolog

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005930 axoneme cellular_component

KEGG:

id description
K16473 IFT20; intraflagellar transport protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005582 True 1453 mRNA 0.48 5 5082357 5085799

Neighbor

gene id symbol gene type direction distance location
AMCG00005581 NA coding downstream 81215 4995653 ~ 5001142 (-)
AMCG00005562 NA coding downstream 98947 4968486 ~ 4983410 (-)
AMCG00005565 NA coding downstream 115821 4955046 ~ 4966536 (-)
AMCG00005563 bcas3,LOC107685068,LOC107562951,LOC107743646,LOC107664928 coding downstream 139009 4938151 ~ 4943348 (-)
AMCG00005566 NA coding downstream 146850 4932924 ~ 4935507 (-)
AMCG00005573 LOC108277496,LOC106581522,LOC106613355 coding upstream 73038 5158837 ~ 5161860 (-)
AMCG00005572 tpst1,LOC107662793 coding upstream 84974 5170773 ~ 5171615 (-)
AMCG00005588 crcp coding upstream 109420 5195219 ~ 5206581 (-)
AMCG00005587 prkrip1,LOC107600793,LOC107691809 coding upstream 156002 5241801 ~ 5244322 (-)
AMCG00005586 NA coding upstream 163575 5249374 ~ 5268678 (-)
G152942 NA non-coding downstream 550625 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 781959 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 822045 4257221 ~ 4260312 (-)
G152853 NA non-coding downstream 1088836 3989919 ~ 3993521 (-)
G152815 NA non-coding downstream 1289913 3788208 ~ 3792444 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding upstream 265554 5351353 ~ 5352345 (-)
G153143 NA non-coding upstream 267554 5353353 ~ 5355697 (-)
G153178 NA non-coding upstream 401510 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 562559 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 655693 5741492 ~ 5748572 (-)
AMCG00005539 NA other downstream 789486 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1213148 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 1449645 3606961 ~ 3632712 (-)
G152645 NA other downstream 1991643 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 2191909 2872506 ~ 2890448 (-)
G153130 NA other upstream 214970 5300769 ~ 5302198 (-)
G153342 NA other upstream 995436 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 1146360 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1404456 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 2023419 7109218 ~ 7145807 (-)

Expression


Co-expression Network