AMCG00005583 (LOC106603777,LOC105895333,LOC108428505)


Basic Information

Item Value
gene id AMCG00005583
gene name LOC106603777,LOC105895333,LOC108428505
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5214813 ~ 5241776 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005583
AGCCAGTGACAGCAAATCAGTACAGTGAGTGAATCGGGAGAGCCTCTGTGGATCTGGGACCAGACAACAatcacaataacacacacacacacgcatctGAAACCTGCAAATGGACAACTGCATCTCCCATCTCCTTCACAGTAACTCAGCCCTGACTTCGTCCTAGAAACAACAGAcgtacaaaaataacaatattaataaaagaaagTGTTGCTGCTGATCCCAGTCTGTTTGCAGCTGCGTGCACCTGGCGGATTTGTTAGCAATGGCAAAACGCAGCACTTTATTTATCCGAATCGTGGAGGGGAAGAATTTACCCGTTAAGGATatCACTGGGAGCAGCGATCCCTACTGCATCGTCCGGATCGATAATGAGGCCATTATAAGGACAGCAACCATTTGGAAGACCCTGTCACCATTTTGGGGGGAGGAGTATAATGTCCACCTCCCAGAGTCCTTTCACACAGTGTCCTTCCATGTGCTGGACGAGGATTCTCTCAGCCGAGATGACGTCATCGGAAAGGTGTCCATCACAAAAGAAGCCCTTGCTGGCAAACCACAAGtGATTGAAATCTTAACAAGAACAGATTCCTCACACAGTTGAGTTATTCAGATTTTCCACATCTCTTTACTGCTTGATTAATGTTGTGCTCGATGTTCATCTATCCCCTTTGGTAGAGACCTTGCCAGGAAGGACCGCAACGGCGCCTCAGATCCTTTTGTGAGAGTCAGCTACAACGGCAAAACACACGAGAGTGCGGTTGTGAAGAGGTCCTGCTACCCACGCTGGAACGAGAGCTTCGAGTTTGAGCTGGACGAGGCTCCTGCAAACGCCCCCCTGAGCGTGGAGGTGTGGGATTGGGATCTGGTCAGCAAGAATGACTTCCTAGGCAAGGTGCTGTTCAACATCAACAGGCTGCAGTCAGAGCAGCAGGAGGAAGGCTGGTTTCGGTTAGGCCCGGACAAACTCAAGCACAGCCAGTACGAGGGGACTCTGGGATCATTGCGCCTGCAGCTGAGGCTCCGAGATGAGATGGTCCTACCTTCCAGCCACTACCAACCCCTCACTGAACTGCTGTGCCAGTCAGTGGGTGCAAATCTCAATGGCAACCGACCAGACTTGATCATGCTCATCGATGAGACGACCACGGCCGAAAGCCGACAGGAAGTTTCCACAAACCTGGTCAAGCTCTTCCTCGGTCAGGGTTTAGCCAAGGAGTTCCTGGACGTTCTCTTCAAGCTGGAACTGGACAAGACCAGTGAACCAAACACACTGTTTCGCAGCAATTCGCTGGCTTCAAAGTCCATGGAGTCTTTTTTAAAGGTGGCTGGGATGCAGTATCTGCACAGACTCCTGGGCCCCACTGTGAACAGAGTCTTTGAGGAGAAGAAATATGTGGAACTGGACCCCAATAAAGTGGAGCTGAGAGAGGCAGGGTGTGCCGGGCTGCACCGTGTCCAGACAGAGGCAGACGTGATCCAACAAAGCACTCACCACCTACAGTCCTACTTGACCGAGCTGCTCCATGCCATTGTGTTATCCGCCAGCTACTGCCCCGCTGCCCTGCGCCACACCTTCCACCAGCTCTATCTGCGGGTCCAGGAGCGCTTCCCCGAAAAGGAGTACAGGAAGGTGAAGTTCATCGCAGTGACCAGTTTCCTCTGCCTGCGTTTCATTTCTCCAGCCATCATGTCACCCAAGCTCTTCCACCTGAGAGAGAAGCACGCCGATGCTCGCACCAGCCGCACGCTACTGCTGCTGGCCAAGGCCATTCAGAACATCAGCAACCTGGACACACTGGCCTGCCGCTCCAAGGAGCCGTGGATGGTGCCCCTGCAGCCCACCATTCAGCAAGGCATCGCCCAGGTCAAAGAGTTCATCACCAAGCTGGTCAGCTGTGAGGAGAGTGAAGACCTCGGCCTGCAGGACAGCTTGAGTCTTCACAGCAGCTCCACCATAAAAGAAGGCTTTCTGTTCCTGCACAAGACCAGGGACAAGTGTATGCTGATCACCTCGCCATTCAAGAAGTACTACGTCACCCTCAGCAAGGACACCCTGTCGTATTCGAGGACTGCGCACTCCAAGAAGAGCTCCTTCATTACGCTGATGAAGATCAGGGCCGTGGAGAAGGTGGAGGAGAAGAGCTTTGGCAGCTCCAATGTCATGCAAATCATCTCCAGTGAGGACAGCGGCCAGATAGAGACTCTGTACCTGATGTGCAAGAGTGTGAATGAGTTGAACCAGTGGCTCTCTGCCTTGAGGAAAGCCTGCATTCACAACACAGAGACCATGAGCTCATATCACCCCGGCGTCTACAAGGGCGAGAAGTGGAGCTGCTGCCACCAAAAGGACAAAACAGCTTTGGGATGTGACAAGACGCGCCATGGGGTGACGCTGCAGGAGTGGAACGACCCGCTCGACCCGGACCTGGAATCCCAGCTCATATTCCGACACTTGATGGGCGTCAGGCAAGCCATGAGgGACAAATACATGGAGATGAACCAGTCAATGAAGAGCAATGGTCAGGATTCTAGTCCAGATGTGGAGAAGCAGAACGCCATCACTAGGCTCCTCCAGGTCCTCCAGGATTTGCAGGAAGCCCATGAGGCCGTGGAGCGCGCGGAACgttcaagaaacaaaaactgccTCCTGGAGCTCCAGACATAAAGGCTTCACTGCCAGTCACCAGTTTTGCTGGGATCTCCCACGTGCTGTTACCTCCGGGCATTTGTCACCATCAGAAATACTGGGCTGCTCGATGCACAAACGCTAGCCTGTGTCAAGAACCATCGCTACCACTCCCTTCCGTGTCCCGTTGTCTTTTTTAAACCCCGCCTGATGAAAGACAATGCATTGCGCTCTCAGATTGCGACCTGTCGCCACCCTGTCGTCTCGCTATCTCTGCTCCCCCGCCACGTCGCCATCATCTTCATATCTCCTTTCTGAAGAGTGTGAGAGGTGTCTGCAGGATTCCTCAATCTGGGCAGagttacaatatatacaacgtataaacataaaaaaactagaTAGGGCCAGACCCTTGTGAGAGGATGAATGTATTTTCCCAGGATTATCACACCAAGGAGTGTTGCATATGAACTATCatactgaaaacaaagtatCAAGATATCTGTGCTGTCGATTATCTTCTGGCTGATTATACTTTTATATGAATGGCCTGGCTGCTTTTTGTAGGTGGGGTGCCTGATATCAATCATGATTGTACATTCTATGCATGGTGCATGTGGAGAACGCTCGCTGGTGGACCCGATTTGAATACGTCTGTCATTCAAGTTACTTTGCGATGGAAATTGACTTCATGTCATtgacttttatatttttcccccctagTTTTCAGCTTGACTAATCAAACCCACCTTGAAAGCTATAACGAACAATTATTAACTTTTTACTTAAGAGGAAGGTAGGATAATAAGGTCAGCTGTTCACTCTCCATGAGATTTTTTAGACTGATTACTGTTTGGCTCTTTAGTCACTGCAAATATACATTctgtacaataaaacacaccacCTTAACTGACACCAATCAAAACGCACTCTTGCACACGTCCCGATCTTGGGAAgtagaaagaaaatgtctgctttttGCAGAGTCGGTTGATATTCATGCGAAATGTAAATTGTGACAAATATTGGAGTCTTATTGAACACTTTTGATACGAATGAGAGAAGGGacaataatacacaatactGCTCAATGGACAAATCAGTCCCTATGTACAgttattcatataattttaCACTTACGATTCCACCAGTCACTGAAACCATCTATCACTGACATTGAATGGTCatgaatttagtttatttttattacgaGCGTGGAtgcagtttctctctctgtgtctgtatatgtaAAGACAACACTGATTGcagtattaaaatatgaacCTGCATGGGGAAAAAGATGCACGTGTTAGTAGGAACGCTCAAACCGCTGAAGTGCTAAGTGTCAAAGCAAAAGTGGTCACCACACAAAGGCAAAGCAAGTTGTTCAACCACAGCCATCATGGGAACACGGTGAGAAGAATGGAGAAACATTGTGTCCATGAACATCCCCAGGACAGCATGGGCAGTCATGGCTGGAGATCCGGAGGAAGACATCTTAAGAGCTTCTTTCAGTCTTAAAAGAGATAGATTTCCTTCTGAACACTTTCAGCtagtttcacagacctcgattACCACTACTATTAAAACTATCATTGGTTAGTCCAATACTAGTGCTAATGTGGGTCTGGGAAAGCTGCCCATAAAATGTTTAAGGTTCCTGGTTTCATGTCTGGGCCTTAGTTGTAAATGTGCCTCCAGAAATGTAGTGGAAACGTCCAATGGGTTTCTCACCGTCTTGCATCTACCACTGTGTTTTGACAACCCATGTCTGTTCTTTACCCTTTAATAACATGTTCTCTCATCATGTGGACAATTTTCTATCTGTATGTGTCAATGAATGTAACCAGTAACACACTGGAAATTCGATTTAATTATAAACGGTCATTAACCATGTCTGCGAGTCTCTTTTAACACGTTTTCTCTTGTGAGAGTatgatggggggagggggatatCATCTGACTGGAACAAGATAATCAAGGTGTGTAATATCTTGTGGGGGGCTCACTTTAACCCCAAAAATATAACTCATTTATTAGATTGACCATCCAGCTGGGTACCAGAAGcactaaatttaatattttccaccCCCTGAATTGCTAGGATTTTTCTTGACATATTTAgatacagttctgtagttgtATTATATCCCAATGGTCTTCTCAGACTAAGCATACTGAGCAAGAGATTAAGAGTTTTGAGGAACTCAGCATTCACTGGcag
>TU192781
AGCAAATCAGTACAGTGAGTGAATCGGGAGAGCCTCTGTGGATCTGGGACCAGACAACAatcacaataacacacacacacacgcatctGAAACCTGCAAATGGACAACTGCATCTCCCATCTCCTTCACAGTAACTCAGCCCTGACTTCGTCCTAGAAACAACAGAcgtacaaaaataacaatattaataaaagaaagTGTTGCTGCTGATCCCAGTCTGTTTGCAGCTGCGTGCACCTGGCGGATTTGTTAGCAATGGCAAAACGCAGCACTTTATTTATCCGAATCGTGGAGGGGAAGAATTTACCCGTTAAGGATatCACTGGGAGCAGCGATCCCTACTGCATCGTCCGGATCGATAATGAGGCCATTATAAGGACAGCAACCATTTGGAAGACCCTGTCACCATTTTGGGGGGAGGAGTATAATGTCCACCTCCCAGAGTCCTTTCACACAGTGTCCTTCCATGTGCTGGACGAGGATTCTCTCAGCCGAGATGACGTCATCGGAAAGGTGTCCATCACAAAAGAAGCCCTTGCTGGCAAACCACAAGGTGAGAAAATCCCAGCTGAGGATGCACGGATCATTAGT

Function

NR:

description
PREDICTED: ras GTPase-activating protein 4-like isoform X4

GO:

id name namespace
GO:0046580 negative regulation of Ras protein signal transduction biological_process
GO:0031235 intrinsic component of the cytoplasmic side of the plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17630 RASA4, CAPRI; Ras GTPase-activating protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005583 True 4853 mRNA 0.48 20 5214813 5241776
TU192781 False 591 TUCP 0.48 4 5214823 5221915

Neighbor

gene id symbol gene type direction distance location
AMCG00005585 NA coding upstream 3476 5208800 ~ 5211337 (+)
AMCG00005569 sgsm2,LOC108277483,LOC107729122 coding upstream 72217 5127087 ~ 5142596 (+)
AMCG00005571 sgsm2,LOC106581519 coding upstream 87840 5121930 ~ 5126973 (+)
AMCG00005570 tnfaip1 coding upstream 123955 5087506 ~ 5090858 (+)
AMCG00005579 NA coding upstream 132793 5080135 ~ 5082020 (+)
AMCG00005584 nup88,LOC106603451,LOC106567676 coding downstream 28621 5270397 ~ 5278525 (+)
AMCG00005612 NA coding downstream 68494 5310270 ~ 5311298 (+)
AMCG00005615 NA coding downstream 83911 5325687 ~ 5339731 (+)
AMCG00005614 ruvbl2,LOC105888489,LOC107664527 coding downstream 107055 5348831 ~ 5355701 (+)
AMCG00005613 NA coding downstream 114427 5356203 ~ 5360923 (+)
G153082 NA non-coding upstream 13278 5195788 ~ 5201535 (+)
G153080 NA non-coding upstream 24017 5190527 ~ 5190796 (+)
G152943 NA non-coding upstream 679989 4532321 ~ 4534824 (+)
G152906 NA non-coding upstream 921931 4292030 ~ 4292882 (+)
G152866 NA non-coding upstream 954178 4258866 ~ 4260635 (+)
G153113 NA non-coding downstream 66169 5307945 ~ 5309091 (+)
G153118 LOC106602865,LOC108260233,LOC108429749,LOC105010822,LOC103035912,LOC105896079 non-coding downstream 79284 5321060 ~ 5323923 (+)
G153154 LOC106602867,LOC107597455 non-coding downstream 202603 5444379 ~ 5445257 (+)
G153271 NA non-coding downstream 558872 5800648 ~ 5800892 (+)
G153274 NA non-coding downstream 675059 5916835 ~ 5955451 (+)
AMCG00005546 acaca,LOC107691719 other upstream 651793 4560213 ~ 4563020 (+)
AMCG00005538 NA other upstream 909657 4282517 ~ 4305156 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 1943969 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 2365205 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 2704137 2503910 ~ 2510676 (+)
AMCG00005647 NA other downstream 1192745 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 1245942 6487718 ~ 6488782 (+)
AMCG00005663 NA other downstream 1366867 6608643 ~ 6662480 (+)
G153675 NA other downstream 2018901 7260677 ~ 7265971 (+)
AMCG00005694 NA other downstream 2065282 7307058 ~ 7334571 (+)

Expression


Co-expression Network