AMCG00005586


Basic Information

Item Value
gene id AMCG00005586
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5249374 ~ 5268678 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005586
CTCAGTTTCAGTGTAATATCTGTCATGAGAGAGTTGAATGCggacaataacacaaatattgtttcaaatcgACCCGGCTGTTGAGGGGTTAACCTACTCAACGAGCACCGCCTTGTGGACGTGGGCGGCACTGCAGCTCGGCGTGTCGGCTCCACTCGCATTGTCTCCGGGCTTCAGCGGCGCGGTGCTGCCCTCACTCCGCGGCCAGCTGCGGCACCATGAGCATCTGTGGACCGCAGGCGGGATGGGACTGAGCCCGCTGTCCTGAGCCAGCCGTGACAGAGCAGCATGTCCCGCAGCAAACGGGACCAGAGATCCAGCCCGGACGGGTTCAGGGTCCTCAGCACCGGGGAGCTGCGGGATCTCTTACAAGATGAAGACAAGATGGACCAGATCGTCAAACTCAGTgaaaagTTCCAGGAGCTGCAGGTGGAACGAGAGACCCTGTTGAGCACCAATCGCAGCCTGGCAGAGGAGAGCCTGTCCATGCGGCCGCGGCTCCAGAACGGAAAACTGCAGCTGGCCGACAGGTACCACACACTGGACAAACTGGCCGCCACCTGCAGGGACAAGCAGGACCACGTCGAGGCCTAcctgcagaaatgcagcccccaGATGGCCCAGACTCTCCTGCAGGACGAGGTGGCTCGCGCTGAGGAGGAATCCGAGGACCTCCTGGAGAAGTTCATGGAAGGCGGCCTGTCTGTGGAGCGCTTTCTGGATTCCTTCCAGAGCTCCAGAAAAGTCTGCCACATCCGTCGCGCTCAGGCCGAGAAAATCCAGGAACTGGTCAGACCAGAGCCGAGCCGCAGGAAGCCCAAGAATTTGGAGGAAGTGAAGCTCATCCCACACCCGGAGCCCCATCCGAACGGCTTCCCTGCTCAGGCCCCTCCGCGTGTGTTCCAGCTGCGCTATGGCCTGACTCCAGCATTTTTTCTGCCCCATTTCTCAATTCCCTCCAGCCAAGCTGCAAGCCTACCTCCTCTGGACTCCCAGCCAGGCCAGCTCCAGGCTTTGGGACCCAACACTCCCAACTCCTGCACTGGGCAGCCAGTAGGCCTGAGAGTGATTGGACAGATTCCTGGTTGGCCCGCCCGGCCTGTACGTTTACAGCAGCTCTACCGGCCACAGAACCACCAGCAGCCAGAACCGCCCTACCGGTAATGTCGCTGCCTGCTCTCTGGACATGTGCTCATCGTGGTCACGTTTTGCAGTGACAGTTTTGTAAAATAGCTTCCACAGAGCTCATGcaatgaaaagacaaacaaactaaatgtaagcATTGATGGTTTGCTGTTGGAATCTTTTAATGTACTGACAGACTTGAACAAACATACTTGGCAAATACCTGCAAAAAATAGGAAACTGTgcatcatgtttttatatgcaattaaaatatccGTAATGACGTGTCGATTGAATATTATCCATGTTAATATGTGGTTTGTTAAAGTCGAGGTATTGCTTAACACGTTTGCCCAAGCctatgtgtgtgttcatgcaCTAAAAGGAGCAAGTTTGGCTGGAAGTGATACAATACTGCATCCATTTGTTACAGAATGAACCATCCAAGAATGAGAACTAGACCCCGTTCTTCTTGTCCTTACTATAATTGCATTGAATGTTACAGTGTCTTTGTTCAGGCGTTTTGGATTGTAAAGTACAGCCAGGCCGTGCCAAGGCCTTCTGTACGCCACGGATAGCATATCTCCCCCTCTCGCACGCTGGCTCGGAGACGCGGTATTAAGGCACGATTGTCTACTGATGTATCTGAGAACAGGACGGGTGCTGAAGTGGtgggttttaattttattatttgtttgattttgatcAATAAATGTCCAATCATAGCATTTGTT

Function

GO: NA

KEGG:

id description
K12185 VPS37; ESCRT-I complex subunit VPS37

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005586 True 1859 mRNA 0.53 4 5249374 5268678

Neighbor

gene id symbol gene type direction distance location
AMCG00005587 prkrip1,LOC107600793,LOC107691809 coding downstream 5052 5241801 ~ 5244322 (-)
AMCG00005588 crcp coding downstream 42793 5195219 ~ 5206581 (-)
AMCG00005572 tpst1,LOC107662793 coding downstream 77759 5170773 ~ 5171615 (-)
AMCG00005573 LOC108277496,LOC106581522,LOC106613355 coding downstream 87514 5158837 ~ 5161860 (-)
AMCG00005582 ift20 coding downstream 163575 5082357 ~ 5085799 (-)
AMCG00005619 rabep1,LOC106603450 coding upstream 14898 5283576 ~ 5296553 (-)
AMCG00005618 derl2,LOC106567674,LOC107735937,LOC107579789,LOC107093934,LOC107580170 coding upstream 37910 5306588 ~ 5309932 (-)
AMCG00005617 NA coding upstream 41981 5310659 ~ 5312974 (-)
AMCG00005620 NA coding upstream 49220 5317898 ~ 5337528 (-)
AMCG00005616 NA coding upstream 75831 5344509 ~ 5348268 (-)
G152942 NA non-coding downstream 717642 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 948976 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 989062 4257221 ~ 4260312 (-)
G152853 NA non-coding downstream 1255853 3989919 ~ 3993521 (-)
G152815 NA non-coding downstream 1456930 3788208 ~ 3792444 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding upstream 82675 5351353 ~ 5352345 (-)
G153143 NA non-coding upstream 84675 5353353 ~ 5355697 (-)
G153178 NA non-coding upstream 218631 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 379680 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 472814 5741492 ~ 5748572 (-)
AMCG00005539 NA other downstream 956503 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1380165 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 1616662 3606961 ~ 3632712 (-)
G152645 NA other downstream 2158660 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 2358926 2872506 ~ 2890448 (-)
G153130 NA other upstream 32091 5300769 ~ 5302198 (-)
G153342 NA other upstream 812557 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 963481 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1221577 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 1840540 7109218 ~ 7145807 (-)

Expression


Co-expression Network