AMCG00005587 (prkrip1,LOC107600793,LOC107691809)


Basic Information

Item Value
gene id AMCG00005587
gene name prkrip1,LOC107600793,LOC107691809
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5241801 ~ 5244322 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005587
GGCAGGTGGCGATCGTGTCCGCAACGCACAGCACTGGACAACCCGGAAATCAAAACCCGGAAGCCACGTCTGTATTGTTGCTGCAGCGAGGAAAGATGGCGACGGCCAAGCAGAAAGACTCCCGGCCGGGGAAAGGGCCGGGGAAGGAGTCTCAGCCCCTGGTGATCGCCAAAACCGCGGCAGAGGAGCAGCGACTCAAACTGGAAAGGTTGATGCGAAACCCGGACAAACCGGCGGTGATCCCGGAGAGACCCAAGGAGTGGAACCCGCGGGCGCCTCCGGAGTTTGTGCGGGATGTGATGGGGTCCAGTGCTGGAGCCGGCAGCGGCGAGTTCCACGTGTACCGACACCTGCGGCGCCGCGAGTACCAGAGGCAGGAGTTTCTGGACCGCATGACTGATAAGCAAAAGATGGATATTGATTATATGAAGAAGGTGGAGGAAAACCAACTGGCAGCGCAGATGAGGACAGAAAAACGAAGGAAGAAAAGGCAAAAgctgaaagaaaagaagaagatgGCCAAAAAATCTAAACTGGAAGACGAAAACAACAAAGGCTCAGAGAATACATCTTCCAgcagcgaggaggaggagaagaaagagggaACCAAGGAAGATGATGCCGAGGCCCCCAGCTTTGTAATGGGAGGGAGGTGAACCCCTGGCTGCCTGCCCCTTTGGAGAAGGTGCTCATCTCTACACAATTTCCTCACTACTCTTACACGGGACAGAATTGGGACAGAATTATTCTTTACTAAGAGCAAAATTCAAGGTTCCTACAATGGAACTGAAACAATCGACGATCAGATCACACCCAGGGCTTTCTTTGAATACTTTTTCACTGATATACAATTTGACTGACTGCTGTAAATATCAATCTAAACAACATCCAACCAGAATCTCCCTAATTTAAAAGGTCACTGTACAAAAAGCTTCATATAGTTTTGGTTTTGGcatctgtcagtgtgtttatCTCTCGACCTACATTCCTGCACGACCTATGAGAAATTTGAGACTGTGGAGTCAGTGACAGCAGTGTCCAAAGCAATTGTGATGTTTAAGTCAGATCCAGGTGTCATGGGAATGCTTTTTATTTCACccaaacatgtatatattttttaaataaagagaaattaaaacaca

Function

symbol description
prkrip1 Predicted to enable double-stranded RNA binding activity; protein kinase binding activity; and protein kinase inhibitor activity. Predicted to be involved in negative regulation of protein kinase activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Predicted to be active in nucleolus. Orthologous to human PRKRIP1 (PRKR interacting protein 1).

NR:

description
PREDICTED: PRKR-interacting protein 1 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005587 True 1142 mRNA 0.48 6 5241801 5244322

Neighbor

gene id symbol gene type direction distance location
AMCG00005588 crcp coding downstream 35220 5195219 ~ 5206581 (-)
AMCG00005572 tpst1,LOC107662793 coding downstream 70186 5170773 ~ 5171615 (-)
AMCG00005573 LOC108277496,LOC106581522,LOC106613355 coding downstream 79941 5158837 ~ 5161860 (-)
AMCG00005582 ift20 coding downstream 156002 5082357 ~ 5085799 (-)
AMCG00005581 NA coding downstream 240659 4995653 ~ 5001142 (-)
AMCG00005586 NA coding upstream 5052 5249374 ~ 5268678 (-)
AMCG00005619 rabep1,LOC106603450 coding upstream 39254 5283576 ~ 5296553 (-)
AMCG00005618 derl2,LOC106567674,LOC107735937,LOC107579789,LOC107093934,LOC107580170 coding upstream 62266 5306588 ~ 5309932 (-)
AMCG00005617 NA coding upstream 66337 5310659 ~ 5312974 (-)
AMCG00005620 NA coding upstream 73576 5317898 ~ 5337528 (-)
G152942 NA non-coding downstream 710069 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 941403 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 981489 4257221 ~ 4260312 (-)
G152853 NA non-coding downstream 1248280 3989919 ~ 3993521 (-)
G152815 NA non-coding downstream 1449357 3788208 ~ 3792444 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding upstream 107031 5351353 ~ 5352345 (-)
G153143 NA non-coding upstream 109031 5353353 ~ 5355697 (-)
G153178 NA non-coding upstream 242987 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 404036 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 497170 5741492 ~ 5748572 (-)
AMCG00005539 NA other downstream 948930 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1372592 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 1609089 3606961 ~ 3632712 (-)
G152645 NA other downstream 2151087 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 2351353 2872506 ~ 2890448 (-)
G153130 NA other upstream 56447 5300769 ~ 5302198 (-)
G153342 NA other upstream 836913 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 987837 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1245933 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 1864896 7109218 ~ 7145807 (-)

Expression


Co-expression Network