AMCG00005588 (crcp)


Basic Information

Item Value
gene id AMCG00005588
gene name crcp
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5195219 ~ 5206581 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005588
ATGGAGGTgaagGACGCGAATGCTGCGATGCTCAGCAATTACGAGGTCTTCCAGCTGCTGACCGACCTAAAAGACCAGAGGAAAGAGACGAAGAACAAGCACAGTGCTGGACAGCAGAACCTCAACACCATCATGTATGAGACGCTGAAGTATTTGTCGAAGACTCCCTGTGCCCGCCAGAGCCCCGAAATGGTGACCGAGTTCCTAACCTCCATGTTGCCACACAAACTCACAAAGGCCGAGAAACTCCAGCTCCTGAATCACAGGCCGCAGACGGCGATGGTGGAGGAGAGTGAAGAGAGGCTGACGGAGGAGCAGATCGAGGAGCTGCTCCAGAAAGTGACAGACATCCTCCCCGGGGACCCCGAGAAGGACTGCGCCCCCGCCCCCGAGGAAGCCGAGATGGAGGAAGGGGAGGCTCAATAATGCCCCGGCGCCCCGACTGCCCCTGGCTGCCACCCGTTTCCTTCATCGACCAGGGATCAGACCGTACGTCACGTGGTCAACCGAGTGCCGGGATGTTACAATGCTTGCACCCGAGTCTCTTTAGTTTCCTTTCAGAAAGCCACAGTTAGCACTTACCCCCGTGGTACCTTTCCCTGTCTTGACCGAAGATCTCTACAGGGTGTATATTTTGGTAACTCTACTCTCAAGGGTGAGGGAGTAGAAGCTGGGGGTAGATGTTTCTTCACCTCGCCACGGCTGACCCTTCCAAACTGGGCTCTGTGAACAGCTTGGCAGGGTCCGCTTGGCTTCTCTCTCCTTACTGAACAGGACATTTTGAATTGGCATGAAGAATATTGATAGTGGATGCATAAATATTGTCACTTTTTGCAAATCAGTTGATTTCTATTCTTAAAAGACCCTGCTTTAATGTAAACGACCCATTGTTTCCGATTCACAATTTAAACTGGTTTTCCTCGGCCTACTGGAAGGCAAGCAGGCAAGCGAGTCGGTCTGTAGACTGTAGATGAGATAAACAACACTCGTACACCCACTTGGTTTCATTCTGCATCTCGTTCTCGTTCTGGCTCtcggcttttttttttttttttctcctcctggCACTTTTTCCCACCCAAgacaggctttttatttttaattgcagcGACAGCTACAGGAGACTGAGAGCCTGTCTTCTTGTGTTTAGCAAGCGTGTATCAGAGCCTTGGAACGAGTCGAAGAAGCTGAGAAACCACATCAAGCTGCATGCCTAATGCAGCGCTTCGAGTGCATGAAGAACGACTGAATGTGTGCAGGGTGacgtttttttcatttttattttgaaagcctCAGCAGTTACCGGCGTCTGTGAAGTGCCATGTCAGGGAGAAGCAAAGTTCAAGTGAGGCCTCAGAAAGGGTTCACTCGCGATCTTCCCGTTTGTGTTTTCCGGAGTGGTCTTGCATGTGGTTCAGCACGAAATGTTCCTCTGTGcctgcatttaataaataaataaatacaaaccatATTCACATGGATTTGTAGTCATTCCTTCGctgtcacttaaaaaaaaaaaagtagtagaTCATAACCTATGTGCTTTAAATTTCTAATTTGTGGAGAAAATACTGTGGGTTGAGGGCAATTCCACAAGAGCTGATGAATTGGATGTAAATGCAGAGAAAACATCCTGGATTTTAAACAGTCGTCGATGTTCTGACCTGAACCCACTGATAATGCAAGGCAGCTTATAAGAAATTCCCCCTTTCCAAACTCGAATTACTGGCCTCTCTGGGCCTCTGCTATCTCTCCCCACAAGGTGCTCACAGTTAATTAGACAGGCTTTCAGAGTTTTTGTTTACCCCTTTAGTTCTTATAAGGCAGTTGTGGTTAATTTGGCTGTTGTGTGGggtgaggttttgttttttgttttttcgtgGTGTTTGCAGCTGGCAACTGCACTTTGAAGTCCAGTTCCAAAttcaaatgttgtaaaatgaatttaaaCCTAAATGCTTCGTGAGCAATCGTAAATATGACcagattttctcttttctctttttttgttgatTCAGAAGGa

Function

symbol description
crcp Predicted to enable DNA-directed 5'-3' RNA polymerase activity and nucleotide binding activity. Acts upstream of or within hematopoietic stem cell homeostasis. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Is expressed in blastomere and hematopoietic system. Orthologous to human CRCP (CGRP receptor component).

NR:

description
PREDICTED: DNA-directed RNA polymerase III subunit RPC9

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005588 True 2023 mRNA 0.47 6 5195219 5206581

Neighbor

gene id symbol gene type direction distance location
AMCG00005572 tpst1,LOC107662793 coding downstream 23604 5170773 ~ 5171615 (-)
AMCG00005573 LOC108277496,LOC106581522,LOC106613355 coding downstream 33359 5158837 ~ 5161860 (-)
AMCG00005582 ift20 coding downstream 109420 5082357 ~ 5085799 (-)
AMCG00005581 NA coding downstream 194077 4995653 ~ 5001142 (-)
AMCG00005562 NA coding downstream 211809 4968486 ~ 4983410 (-)
AMCG00005587 prkrip1,LOC107600793,LOC107691809 coding upstream 35220 5241801 ~ 5244322 (-)
AMCG00005586 NA coding upstream 42793 5249374 ~ 5268678 (-)
AMCG00005619 rabep1,LOC106603450 coding upstream 76995 5283576 ~ 5296553 (-)
AMCG00005618 derl2,LOC106567674,LOC107735937,LOC107579789,LOC107093934,LOC107580170 coding upstream 100007 5306588 ~ 5309932 (-)
AMCG00005617 NA coding upstream 104078 5310659 ~ 5312974 (-)
G152942 NA non-coding downstream 663487 4531440 ~ 4531732 (-)
G152915 NA non-coding downstream 894821 4292030 ~ 4300398 (-)
G152894 NA non-coding downstream 934907 4257221 ~ 4260312 (-)
G152853 NA non-coding downstream 1201698 3989919 ~ 3993521 (-)
G152815 NA non-coding downstream 1402775 3788208 ~ 3792444 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding upstream 144772 5351353 ~ 5352345 (-)
G153143 NA non-coding upstream 146772 5353353 ~ 5355697 (-)
G153178 NA non-coding upstream 280728 5487309 ~ 5489599 (-)
G153236 NA non-coding upstream 441777 5648358 ~ 5648709 (-)
G153248 dhx33 non-coding upstream 534911 5741492 ~ 5748572 (-)
AMCG00005539 NA other downstream 902348 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 1326010 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 1562507 3606961 ~ 3632712 (-)
G152645 NA other downstream 2104505 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 2304771 2872506 ~ 2890448 (-)
G153130 NA other upstream 94188 5300769 ~ 5302198 (-)
G153342 NA other upstream 874654 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 1025578 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 1283674 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 1902637 7109218 ~ 7145807 (-)

Expression


Co-expression Network